RchiOBHm_Chr4g0403491

Oxysterol-binding protein-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
22786229 .. 22790260
4032 bp
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UTR
Exon/CDS
Intron
PRQ37522

Sequence Viewer

Length: 360 bp
ATGTGCTTCATTATGTTTCCTATACTTGTCAGTCACCACCCAACACTCATTGCTTGCCACTGTGAAGGTAGAGGGTGGAAGTTCTGGGCTGACAGCAATCTCCGGTCAAAATTTTGGGGGCGATCAATTCAGCTTGACCCTGTTGGAGTTATAAGCGTGGAGTTTGATGATGGTGAAATTTTCCAGTGGAGCAAGGTCACAACAAATATATATAATCTCATTCTCGGTAAACTTTATTGTGACCACCATGGTACAATGCACATACGGGGTAATCGTGAGTATTCATGCAAACTGAAGTTCAAAGAGCAATCCATTCTTGACCGAAATCCTCACCAGCTTTGTCTGATCCTGGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.87

Weight (kDa)

8.25

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 10 - 112 1.4e-31 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 2 cut(s) 110, 177
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 133, 337
AluI AGCT 2 cut(s) 133, 337
AlwI GGATC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 110, 177
AsuHPI GGTGA 3 cut(s) 26, 185, 323
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 247, 349
BsaWI WCCGGW 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 247, 349
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 103
Bsp143I GATC 2 cut(s) 122, 345
Bsp19I CCATGG 1 cut(s) 247
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 247, 349
BssMI GATC 2 cut(s) 122, 345
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 247
BstKTI GATC 2 cut(s) 125, 348
BstMBI GATC 2 cut(s) 122, 345
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 58, 191
Cac8I GCNNGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 252
CviAII CATG 2 cut(s) 248, 285
CviJI RGCY 3 cut(s) 89, 133, 337
CviKI_1 RGCY 3 cut(s) 89, 133, 337
CviQI GTAC 1 cut(s) 252
DpnI GATC 2 cut(s) 124, 347
DpnII GATC 2 cut(s) 122, 345
Eco130I CCWWGG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 251, 288
FaiI YATR 9 cut(s) 14, 23, 152, 209, 211, 213, 249, 263, 286
FatI CATG 2 cut(s) 247, 284
HapII CCGG 1 cut(s) 103
Hin1II CATG 2 cut(s) 251, 288
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 26, 185, 323
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 275, 317
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 259, 288
Hsp92II CATG 2 cut(s) 251, 288
Kzo9I GATC 2 cut(s) 122, 345
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 6 cut(s) 70, 116, 153, 197, 335, 347
MaeIII GTNAC 3 cut(s) 32, 196, 239
MalI GATC 2 cut(s) 124, 347
MboI GATC 2 cut(s) 122, 345
MluCI AATT 3 cut(s) 110, 126, 177
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 2 cut(s) 65, 339
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
NcoI CCATGG 1 cut(s) 247
NdeII GATC 2 cut(s) 122, 345
NlaIII CATG 2 cut(s) 251, 288
NmuCI GTSAC 3 cut(s) 32, 196, 239
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PsiI TTATAA 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 122, 345
ScrFI CCNGG 1 cut(s) 350
SetI ASST 4 cut(s) 70, 135, 198, 339
Sse9I AATT 3 cut(s) 110, 126, 177
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 62
TaqII GACCGA 1 cut(s) 336
TasI AATT 3 cut(s) 110, 126, 177
TscAI CASTG 2 cut(s) 65, 191
TseFI GTSAC 3 cut(s) 32, 196, 239
Tsp45I GTSAC 3 cut(s) 32, 196, 239
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 65, 191
XapI RAATTY 2 cut(s) 110, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.