Rorug07G0072800

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001060
Physical Location & Seq
Forward (+)
5606601 .. 5607595
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0072800.1

Sequence Viewer

Length: 753 bp
ATGTGTAGGTCGACGGACTACCCCGGCTTTCGGGCCAGAAGAGAAGCCCTAAAGATTCAAGCTTTCTTCATACGGTTTTCGGGTTTGGATTCTCATAAGCCGTTACCGGAATCGCTCACTCTTTCGTATCTTCCAAGAATCAACGGCACCGCTCTGGAGATCGACGGGTCAAAGATCCGACCCGACTCGCCGGCGTTCGTGACGCTCTATCGGGCGGTTAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCGGTTCGGGCCGGCGACGGGGTCCAGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGTTGAAGGGGATTTTCAGGAAAGACGAGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCGTGGCGGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATACCGGAGGTGGACGAGGAATCGGACGGCGGATGTTGTTGCACTTGCGGGGAAATGAACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGTTGAGGAGGAGTTGGAGATGGATGTGGAGGGAGTGAGATGGGCTGTGGACGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTGAGACGCAGGAGATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

250

Amino Acids

27.87

Weight (kDa)

5.02

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 259
AclWI GGATC 1 cut(s) 169
AcvI CACGTG 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 30, 282, 295
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 2 cut(s) 59, 325
AjiI CACGTC 2 cut(s) 607, 667
AluBI AGCT 2 cut(s) 62, 729
AluI AGCT 2 cut(s) 62, 729
Alw26I GTCTC 1 cut(s) 727
AlwI GGATC 1 cut(s) 169
AoxI GGCC 3 cut(s) 33, 273, 714
AspS9I GGNCC 3 cut(s) 33, 273, 286
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 241, 614
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 448
BccI CCATC 3 cut(s) 593, 628, 648
BceAI ACGGC 4 cut(s) 85, 160, 429, 562
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 727
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 286
BmgBI CACGTC 2 cut(s) 607, 667
BmgT120I GGNCC 3 cut(s) 33, 273, 286
BmiI GGNNCC 2 cut(s) 148, 287
BmrFI CCNGG 1 cut(s) 24
BpmI CTGGAG 3 cut(s) 176, 404, 533
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 106, 523
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 282, 295
Bse118I RCCGGY 2 cut(s) 190, 275
Bse1I ACTGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 5 cut(s) 505, 557, 604, 643, 719
BseLI CCNNNNNNNGG 3 cut(s) 30, 282, 295
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 7 cut(s) 326, 419, 530, 608, 626, 635, 638
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 35, 275, 716
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 5 cut(s) 24, 107, 191, 276, 524
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 30, 282, 295
BsmAI GTCTC 1 cut(s) 727
BsmBI CGTCTC 1 cut(s) 727
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 3 cut(s) 35, 275, 716
Bsp143I GATC 2 cut(s) 159, 174
BspANI GGCC 3 cut(s) 35, 275, 716
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 148, 287
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 152
BsrFI RCCGGY 2 cut(s) 190, 275
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 2 cut(s) 190, 275
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 159, 174
Bst4CI ACNGT 2 cut(s) 75, 581
Bst6I CTCTTC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 192, 277, 380
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 5 cut(s) 505, 557, 604, 643, 719
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 2 cut(s) 162, 177
BstMAI GTCTC 1 cut(s) 727
BstMBI GATC 2 cut(s) 159, 174
BstMWI GCNNNNNNNGC 3 cut(s) 221, 272, 735
BstSCI CCNGG 1 cut(s) 22
BstUI CGCG 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 3 cut(s) 35, 275, 716
BtgZI GCGATG 2 cut(s) 467, 485
BtrI CACGTC 2 cut(s) 607, 667
BtsCI GGATG 5 cut(s) 505, 557, 604, 643, 719
Cac8I GCNNGC 3 cut(s) 192, 277, 380
Cfr10I RCCGGY 2 cut(s) 190, 275
Cfr13I GGNCC 3 cut(s) 33, 273, 286
CseI GACGC 2 cut(s) 211, 744
CviAII CATG 1 cut(s) 682
DdeI CTNAG 1 cut(s) 711
DpnI GATC 2 cut(s) 161, 176
DpnII GATC 2 cut(s) 159, 174
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 2 cut(s) 434, 564
Eco147I AGGCCT 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 448
Esp3I CGTCTC 1 cut(s) 727
FaeI CATG 1 cut(s) 685
FaiI YATR 3 cut(s) 71, 96, 683
FaqI GGGAC 1 cut(s) 456
FatI CATG 1 cut(s) 681
FauI CCCGC 3 cut(s) 252, 480, 560
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 5 cut(s) 492, 564, 611, 650, 706
Fsp4HI GCNGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 3 cut(s) 176, 404, 533
HaeIII GGCC 3 cut(s) 35, 275, 716
HapII CCGG 5 cut(s) 24, 107, 191, 276, 524
HgaI GACGC 2 cut(s) 211, 744
Hin1II CATG 1 cut(s) 685
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 2 cut(s) 60, 727
HinfI GANTC 6 cut(s) 55, 89, 110, 138, 185, 539
HpaII CCGG 5 cut(s) 24, 107, 191, 276, 524
HphI GGTGA 2 cut(s) 241, 614
Hpy166II GTNNAC 3 cut(s) 12, 532, 664
Hpy188I TCNGA 2 cut(s) 179, 544
Hpy188III TCNNGA 3 cut(s) 155, 199, 337
Hpy8I GTNNAC 3 cut(s) 12, 532, 664
Hpy99I CGWCG 3 cut(s) 16, 167, 284
HpyAV CCTTC 4 cut(s) 220, 229, 310, 319
HpyCH4III ACNGT 2 cut(s) 75, 581
HpyCH4IV ACGT 3 cut(s) 447, 606, 666
HpyCH4V TGCA 2 cut(s) 372, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 272, 735
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 3 cut(s) 447, 606, 666
Hsp92II CATG 1 cut(s) 685
KroI GCCGGC 2 cut(s) 190, 275
KroNI GCCGGC 2 cut(s) 192, 277
Kzo9I GATC 2 cut(s) 159, 174
MaeII ACGT 3 cut(s) 447, 606, 666
MaeIII GTNAC 4 cut(s) 102, 199, 409, 602
MalI GATC 2 cut(s) 161, 176
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 159, 174
MboII GAAGA 3 cut(s) 51, 58, 122
MflI RGATCY 1 cut(s) 174
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 202, 609
MreI CGCCGGCG 1 cut(s) 190
MroNI GCCGGC 2 cut(s) 190, 275
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 5 cut(s) 24, 107, 191, 276, 524
MspR9I CCNGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 221, 272, 735
NaeI GCCGGC 2 cut(s) 192, 277
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 159, 174
NgoMIV GCCGGC 2 cut(s) 190, 275
NlaIII CATG 1 cut(s) 685
NlaIV GGNNCC 2 cut(s) 148, 287
NmuCI GTSAC 3 cut(s) 199, 409, 602
PceI AGGCCT 1 cut(s) 716
PdiI GCCGGC 2 cut(s) 192, 277
PfeI GAWTC 5 cut(s) 55, 89, 110, 138, 539
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 448
PspCI CACGTG 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 148, 287
PspPI GGNCC 3 cut(s) 33, 273, 286
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 284
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 159, 174
Sau96I GGNCC 3 cut(s) 33, 273, 286
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 24
SgrAI CRCCGGYG 1 cut(s) 190
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 730
SmoI CTYRAG 1 cut(s) 730
Sse9I AATT 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 716
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 75, 581
TaiI ACGT 3 cut(s) 450, 609, 669
TaqI TCGA 3 cut(s) 11, 162, 294
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 5 cut(s) 55, 89, 110, 138, 539
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 3 cut(s) 199, 409, 602
Tsp45I GTSAC 3 cut(s) 199, 409, 602
TspDTI ATGAA 3 cut(s) 58, 494, 590
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.