Rmu_sc0002158.1_g000010

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002158.1
OG0001060
Physical Location & Seq
Forward (+)
32673 .. 38668
5996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002158.1_g000010.1.cds

Sequence Viewer

Length: 1806 bp
atgcgagtgaaggagatgcacccgctctgctgtataacgctggagagcgccggcatcggcgaccagtcgccggaggcgtcgtcgctgtcgaggacgcggagcttgccggcgagtctggcggcgtcttcgctcggatctgccggcaatgcaggacggcagacgggatctgaggccaccgtggccggagttctccacaagtggaccaattacggcaagggatggagatccaggtggttcctgctgcgaaacggcgtcctctcctacgccaagattcggatgccggagaatctcaacctcctgaacccaaacgacgacgttcgcgtcatcggcgagatctcgactcggaccacgcaccggctttcgaggattgacagcgggagtatcgggcgacggaagcaccagaaaaccgttggaatcgtccacctcaagatttcatccttcagagaaagcaagtcggatgatcggaagttttacatatttactgctacaaagactcttcatttaaggactaattcaaagagagaccgggcggcttggttgcaagctttggcatcaacccggagtctatttccactgagatcgttgaatgataatctctcccttgtacaaacggatttatctatatccactgagagactaaagagccgcctacttgaagagggaaccagtgagaacactgtaaaggattgtgagcagataatgctctctgaattctctcaattacaaggacagctcaaggttctgtgcgaagaacggtccaatttgttcgacacattaagacagttggaggcagctaactttgaagctgaagcctctggaattcacgatggtgaataccaattgacgaagcatgagttttccagtttgcggcagggaaaatatagtgaatgcagcacaactgaatcatctgacgatattgagaaacaggagctcgaggaagtgtcagatgaagatgaattgtcattttttgacacaaaagagtattttactgaactgaacataagttgcgggtctgtgcaagttgtaaataacacaaataagatcaacaaacctcgaagtcaatttagtaatgttgaggagatgcacacagaaaaggaaattagtgatgttagatatccacacattgaaaggagaaaagagcttcctgttccagttgagaaggagaaaggagtcagcctttggtccatgattaaagacaatgtgggaaaggatctcactcgagtttgtctccctgtgtattttaatgagccaatatcatctcttcagaagtgttgtgaggacatggagtactcgtatcttttggatcgggcatatgagtgtggaaaaatggggaatagtctccaaaggattctaaatgttgctgcatttgcggtttctggttatgcatcatcggaagggcggcactgtaagccattcaatcctttgttaggtgaaacttatgaagccgactatccagataaaggaattcgcttcttctctgaaaaggtcagtcaccacccaacactcattgcttgccactgtgaaggtagagggtggaagttctgggctgacagcaatctccggtcaaaattttgggggcgatcaattcagcttgaccctgttggagttctaagcgtggagtttgatgatggcgaaattttccagtggagcaaggtcacaacaaatatatataatctcattctcggtaaactttattgtgaccaccatggtacaatgcacatacggggtaatcgtgagtattcatgcaaactgaagttcaaagagcaatccattcttgaccgaaatcctcaccaggttagtggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

601

Amino Acids

68.27

Weight (kDa)

6.82

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 2 cut(s) 97, 321
AclWI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 5 cut(s) 710, 819, 1464, 1568, 1635
AcuI CTGAAG 4 cut(s) 424, 828, 1247, 1772
AcyI GRCGYC 3 cut(s) 77, 122, 252
AfaI GTAC 3 cut(s) 606, 1289, 1711
AfiI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
AgsI TTSAA 7 cut(s) 516, 586, 656, 803, 1127, 1417, 1759
AjnI CCWGG 2 cut(s) 227, 1791
AleI CACNNNNGTG 1 cut(s) 828
AluBI AGCT 8 cut(s) 102, 545, 733, 794, 806, 931, 1141, 1591
AluI AGCT 8 cut(s) 102, 545, 733, 794, 806, 931, 1141, 1591
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 4 cut(s) 516, 628, 1232, 1343
AlwI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
Ama87I CYCGRG 2 cut(s) 932, 1218
AoxI GGCC 2 cut(s) 171, 180
ApeKI GCWGC 4 cut(s) 241, 791, 891, 1361
ApoI RAATTY 5 cut(s) 710, 819, 1464, 1568, 1635
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 4 cut(s) 201, 345, 756, 1182
AsuC2I CCSGG 2 cut(s) 527, 559
AsuHPI GGTGA 4 cut(s) 842, 1442, 1484, 1781
AvaI CYCGRG 2 cut(s) 932, 1218
AvaII GGWCC 4 cut(s) 201, 345, 756, 1182
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 933
BbvI GCAGC 4 cut(s) 228, 803, 903, 1348
BccI CCATC 3 cut(s) 213, 821, 1622
BceAI ACGGC 3 cut(s) 170, 226, 265
BciT130I CCWGG 2 cut(s) 229, 1793
BcnI CCSGG 2 cut(s) 527, 559
BcoDI GTCTC 4 cut(s) 516, 628, 1232, 1343
BfoI RGCGCY 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 179
BglII AGATCT 1 cut(s) 333
BisI GCNGC 9 cut(s) 120, 242, 531, 646, 792, 869, 892, 1362, 1400
BlsI GCNGC 9 cut(s) 121, 243, 532, 647, 793, 870, 893, 1363, 1401
BmcAI AGTACT 1 cut(s) 1289
Bme1390I CCNGG 4 cut(s) 229, 527, 559, 1793
Bme18I GGWCC 4 cut(s) 201, 345, 756, 1182
BmeT110I CYCGRG 2 cut(s) 932, 1218
BmgT120I GGNCC 4 cut(s) 201, 345, 756, 1182
BmiI GGNNCC 2 cut(s) 236, 664
BmrFI CCNGG 4 cut(s) 229, 527, 559, 1793
BmsI GCATC 6 cut(s) 6, 63, 267, 560, 1071, 1394
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 410, 719
BpuMI CCSGG 2 cut(s) 527, 559
BsaBI GATNNNNATC 1 cut(s) 223
BsaHI GRCGYC 3 cut(s) 77, 122, 252
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 177, 1705
BsaWI WCCGGW 1 cut(s) 1560
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 1277, 1307
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
Bse118I RCCGGY 4 cut(s) 50, 106, 140, 354
Bse1I ACTGG 5 cut(s) 64, 666, 861, 1151, 1642
Bse3DI GCAATG 2 cut(s) 151, 1506
Bse8I GATNNNNATC 1 cut(s) 223
BseBI CCWGG 2 cut(s) 229, 1793
BseDI CCNNGG 2 cut(s) 177, 1705
BseGI GGATG 4 cut(s) 224, 282, 434, 463
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
BseMI GCAATG 2 cut(s) 151, 1506
BseMII CTCAG 3 cut(s) 159, 566, 621
BseNI ACTGG 5 cut(s) 64, 666, 861, 1151, 1642
BseRI GAGGAG 1 cut(s) 1091
BseXI GCAGC 4 cut(s) 228, 803, 903, 1348
Bsh1236I CGCG 2 cut(s) 97, 321
BshFI GGCC 2 cut(s) 173, 182
BsiHKAI GWGCWC 1 cut(s) 933
BsiHKCI CYCGRG 2 cut(s) 932, 1218
BslI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
BsmAI GTCTC 4 cut(s) 516, 628, 1232, 1343
BsmI GAATGC 1 cut(s) 893
BsnI GGCC 2 cut(s) 173, 182
Bso31I GGTCTC 1 cut(s) 516
BsoBI CYCGRG 2 cut(s) 932, 1218
Bsp1286I GDGCHC 1 cut(s) 933
Bsp1407I TGTACA 1 cut(s) 604
Bsp19I CCATGG 1 cut(s) 1705
BspANI GGCC 2 cut(s) 173, 182
BspCNI CTCAG 3 cut(s) 160, 567, 622
BspFNI CGCG 2 cut(s) 97, 321
BspLI GGNNCC 2 cut(s) 236, 664
BspPI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 151, 1506
BsrFI RCCGGY 4 cut(s) 50, 106, 140, 354
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 5 cut(s) 64, 666, 861, 1151, 1642
BssAI RCCGGY 4 cut(s) 50, 106, 140, 354
BssECI CCNNGG 2 cut(s) 177, 1705
BssNI GRCGYC 3 cut(s) 77, 122, 252
BssT1I CCWWGG 1 cut(s) 1705
Bst2UI CCWGG 2 cut(s) 229, 1793
Bst4CI ACNGT 7 cut(s) 178, 409, 679, 756, 783, 1406, 1520
Bst6I CTCTTC 3 cut(s) 501, 651, 1266
BstACI GRCGYC 3 cut(s) 77, 122, 252
BstAPI GCANNNNNTGC 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 604
BstC8I GCNNGC 6 cut(s) 52, 104, 108, 142, 543, 1513
BstDEI CTNAG 4 cut(s) 168, 575, 630, 1610
BstDSI CCRYGG 2 cut(s) 177, 1705
BstENI CCTNNNNNAGG 1 cut(s) 1425
BstF5I GGATG 4 cut(s) 224, 282, 434, 463
BstFNI CGCG 2 cut(s) 97, 321
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 4 cut(s) 516, 628, 1232, 1343
BstMWI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
BstNI CCWGG 2 cut(s) 229, 1793
BstSCI CCNGG 4 cut(s) 227, 525, 557, 1791
BstUI CGCG 2 cut(s) 97, 321
BstV1I GCAGC 4 cut(s) 228, 803, 903, 1348
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 5 cut(s) 134, 164, 224, 333, 1210
BstXI CCANNNNNNTGG 1 cut(s) 1799
BstYI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
BsuRI GGCC 2 cut(s) 173, 182
BtgI CCRYGG 2 cut(s) 177, 1705
BtsCI GGATG 4 cut(s) 224, 282, 434, 463
BtsIMutI CAGTG 7 cut(s) 572, 627, 673, 675, 1402, 1516, 1649
Cac8I GCNNGC 6 cut(s) 52, 104, 108, 142, 543, 1513
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 4 cut(s) 50, 106, 140, 354
Cfr13I GGNCC 4 cut(s) 201, 345, 756, 1182
CseI GACGC 5 cut(s) 66, 103, 111, 241, 310
CsiI ACCWGGT 1 cut(s) 1791
Csp6I GTAC 3 cut(s) 605, 1288, 1710
CviAII CATG 5 cut(s) 851, 1186, 1282, 1706, 1743
CviQI GTAC 3 cut(s) 605, 1288, 1710
DdeI CTNAG 4 cut(s) 168, 575, 630, 1610
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 501, 651, 1266
EarI CTCTTC 3 cut(s) 501, 651, 1266
Ecl136II GAGCTC 1 cut(s) 931
Eco130I CCWWGG 1 cut(s) 1705
Eco24I GRGCYC 1 cut(s) 933
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 1115
Eco47I GGWCC 4 cut(s) 201, 345, 756, 1182
Eco53kI GAGCTC 1 cut(s) 931
Eco57I CTGAAG 4 cut(s) 424, 828, 1247, 1772
Eco88I CYCGRG 2 cut(s) 932, 1218
EcoICRI GAGCTC 1 cut(s) 931
EcoNI CCTNNNNNAGG 1 cut(s) 1425
EcoRI GAATTC 3 cut(s) 710, 819, 1464
EcoRII CCWGG 2 cut(s) 227, 1791
EcoRV GATATC 1 cut(s) 1115
EcoT14I CCWWGG 1 cut(s) 1705
EcoT22I ATGCAT 1 cut(s) 1387
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 1 cut(s) 1705
FaeI CATG 5 cut(s) 854, 1189, 1285, 1709, 1746
FatI CATG 5 cut(s) 850, 1185, 1281, 1705, 1742
FauI CCCGC 3 cut(s) 30, 368, 1001
FauNDI CATATG 1 cut(s) 1312
Fnu4HI GCNGC 9 cut(s) 120, 242, 531, 646, 792, 869, 892, 1362, 1400
FokI GGATG 4 cut(s) 231, 289, 421, 470
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 9 cut(s) 120, 242, 531, 646, 792, 869, 892, 1362, 1400
GlaI GCGC 1 cut(s) 49
GluI GCNGC 9 cut(s) 120, 242, 531, 646, 792, 869, 892, 1362, 1400
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 173, 182
HgaI GACGC 5 cut(s) 66, 103, 111, 241, 310
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 3 cut(s) 77, 122, 252
Hin1II CATG 5 cut(s) 854, 1189, 1285, 1709, 1746
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 543
HphI GGTGA 4 cut(s) 842, 1442, 1484, 1781
Hpy166II GTNNAC 3 cut(s) 201, 421, 1688
Hpy188III TCNNGA 8 cut(s) 298, 337, 427, 816, 824, 1454, 1733, 1775
Hpy8I GTNNAC 3 cut(s) 201, 421, 1688
Hpy99I CGWCG 5 cut(s) 82, 85, 314, 317, 393
HpyAV CCTTC 5 cut(s) 4, 448, 1153, 1388, 1517
HpyCH4III ACNGT 7 cut(s) 178, 409, 679, 756, 783, 1406, 1520
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
HpyF3I CTNAG 4 cut(s) 168, 575, 630, 1610
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 3 cut(s) 77, 122, 252
Hsp92II CATG 5 cut(s) 854, 1189, 1285, 1709, 1746
HspAI GCGC 1 cut(s) 48
KroI GCCGGC 3 cut(s) 50, 106, 140
KroNI GCCGGC 3 cut(s) 52, 108, 142
LmnI GCTCC 3 cut(s) 99, 928, 1647
Lsp1109I GCAGC 4 cut(s) 228, 803, 903, 1348
LweI GCATC 6 cut(s) 6, 63, 267, 560, 1071, 1394
MabI ACCWGGT 1 cut(s) 1791
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 1490, 1654, 1697
MbiI CCGCTC 1 cut(s) 25
MboII GAAGA 7 cut(s) 117, 488, 668, 761, 962, 1253, 1465
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
MhlI GDGCHC 1 cut(s) 933
MlyI GAGTC 5 cut(s) 121, 334, 487, 571, 1179
MmeI TCCRAC 4 cut(s) 391, 435, 765, 1582
Mph1103I ATGCAT 1 cut(s) 1387
MroNI GCCGGC 3 cut(s) 50, 106, 140
MseI TTAA 5 cut(s) 503, 776, 1191, 1242, 1804
MslI CAYNNNNRTG 2 cut(s) 828, 1315
MspA1I CMGCKG 1 cut(s) 375
MspR9I CCNGG 4 cut(s) 229, 527, 559, 1793
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 893
MvaI CCWGG 2 cut(s) 229, 1793
MvnI CGCG 2 cut(s) 97, 321
MwoI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
NaeI GCCGGC 3 cut(s) 52, 108, 142
NciI CCSGG 2 cut(s) 527, 559
NcoI CCATGG 1 cut(s) 1705
NdeI CATATG 1 cut(s) 1312
NgoMIV GCCGGC 3 cut(s) 50, 106, 140
NlaIII CATG 5 cut(s) 854, 1189, 1285, 1709, 1746
NlaIV GGNNCC 2 cut(s) 236, 664
NmuCI GTSAC 3 cut(s) 1490, 1654, 1697
NsiI ATGCAT 1 cut(s) 1387
OliI CACNNNNGTG 1 cut(s) 828
PaeR7I CTCGAG 2 cut(s) 932, 1218
PcsI WCGNNNNNNNCGW 4 cut(s) 74, 86, 318, 1729
PctI GAATGC 1 cut(s) 893
PdiI GCCGGC 3 cut(s) 52, 108, 142
PfeI GAWTC 5 cut(s) 271, 286, 414, 902, 1348
PkrI GCNGC 9 cut(s) 121, 243, 532, 647, 793, 870, 893, 1363, 1401
PleI GAGTC 5 cut(s) 120, 334, 487, 570, 1178
PpsI GAGTC 5 cut(s) 120, 334, 487, 570, 1178
Psp124BI GAGCTC 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 227, 1791
PspGI CCWGG 2 cut(s) 227, 1791
PspN4I GGNNCC 2 cut(s) 236, 664
PspPI GGNCC 4 cut(s) 201, 345, 756, 1182
PspXI VCTCGAGB 2 cut(s) 932, 1218
PsuI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
RsaI GTAC 3 cut(s) 606, 1289, 1711
RsaNI GTAC 3 cut(s) 605, 1288, 1710
RseI CAYNNNNRTG 2 cut(s) 828, 1315
SacI GAGCTC 1 cut(s) 933
SaqAI TTAA 5 cut(s) 503, 776, 1191, 1242, 1804
SatI GCNGC 9 cut(s) 120, 242, 531, 646, 792, 869, 892, 1362, 1400
Sau96I GGNCC 4 cut(s) 201, 345, 756, 1182
ScaI AGTACT 1 cut(s) 1289
SchI GAGTC 5 cut(s) 121, 334, 487, 571, 1179
ScrFI CCNGG 4 cut(s) 229, 527, 559, 1793
SduI GDGCHC 1 cut(s) 933
SexAI ACCWGGT 1 cut(s) 1791
SfaNI GCATC 6 cut(s) 6, 63, 267, 560, 1071, 1394
SfiI GGCCNNNNNGGCC 1 cut(s) 179
Sfr274I CTCGAG 2 cut(s) 932, 1218
SinI GGWCC 4 cut(s) 201, 345, 756, 1182
SlaI CTCGAG 2 cut(s) 932, 1218
SmiMI CAYNNNNRTG 2 cut(s) 828, 1315
SmlI CTYRAG 4 cut(s) 425, 734, 932, 1218
SmoI CTYRAG 4 cut(s) 425, 734, 932, 1218
SstI GAGCTC 1 cut(s) 933
StyD4I CCNGG 4 cut(s) 227, 525, 557, 1791
StyI CCWWGG 1 cut(s) 1705
TaaI ACNGT 7 cut(s) 178, 409, 679, 756, 783, 1406, 1520
TaiI ACGT 1 cut(s) 318
TaqI TCGA 7 cut(s) 89, 338, 362, 768, 933, 1054, 1219
TaqII GACCGA 1 cut(s) 1794
TatI WGTACW 2 cut(s) 604, 1287
TauI GCSGC 5 cut(s) 122, 533, 648, 871, 1402
TfiI GAWTC 5 cut(s) 271, 286, 414, 902, 1348
Tru1I TTAA 5 cut(s) 503, 776, 1191, 1242, 1804
Tru9I TTAA 5 cut(s) 503, 776, 1191, 1242, 1804
TscAI CASTG 7 cut(s) 579, 634, 673, 682, 1409, 1523, 1649
TseFI GTSAC 3 cut(s) 1490, 1654, 1697
TseI GCWGC 4 cut(s) 241, 791, 891, 1361
Tsp45I GTSAC 3 cut(s) 1490, 1654, 1697
TspDTI ATGAA 6 cut(s) 423, 488, 963, 969, 1455, 1731
TspGWI ACGGA 2 cut(s) 406, 626
TspRI CASTG 7 cut(s) 579, 634, 673, 682, 1409, 1523, 1649
VpaK11BI GGWCC 4 cut(s) 201, 345, 756, 1182
XagI CCTNNNNNAGG 1 cut(s) 1425
XapI RAATTY 5 cut(s) 710, 819, 1464, 1568, 1635
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XhoI CTCGAG 2 cut(s) 932, 1218
ZrmI AGTACT 1 cut(s) 1289
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.