Rh7AG200200

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001060
Physical Location & Seq
Forward (+)
18149132 .. 18158599
9468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG200200.1

Sequence Viewer

Length: 1497 bp
ATGCGAGTGAAGGAGATGCACCCGCTCTGCTGTATAACGCTGGAGAGCGCCGGCATCGGCGACCAGTCGCCGGAGGCGTCGTCGCTGTCGAGGACGCGGAGCTTGCCGGCGAGTCTGGCGGCGTCTTCGCTCGGATCTGCCGGCAATGCAGGACGGCAGACGGGATCTGAGGCCACCGTCGCCGGAGTGCTCCACAAGTGGACCAATTACGGCAAGGGATGGAGATCCAGGTGGTTCCTGCTGCGAAACGGCGTCCTCTCCTACGCCAAGATTCGGCTGCCGGAGAATCTCAACCTCCTGAACCCAAACGACGACGTTCGCGTCATCGGCGAGATCTCGACTCGGACCACGCACCGGCTTTCGAGGATTGACAGCGGGAGTATCGGGCGACGGAAGCACCAGAAAACCGTTGGAATCGTCCACCTCAAGATTTCATCCTTCAGAGAAAGCAAGTCGGATGATCGGAAGTTTTACATATTTACTGCTACAAAGACTCTTCATTTAAGGACTAATTCAAAGAGAGACCGGGCGGCTTGGTTGCAAGCTTTGGCATCAACCCGGAGTCTATTTCCACTGAGATCGTTGAATGATAATCTCTCCCTTGTACAAACGGATTTATCTGTATCTACTGAGAGACTAAAGAGCCGCCTACTTGAAGAGGGAACCAGTGAGAACACTGTAAAGGATTGTGAGCAGATAATGCTCTCTGAATTCTCTCAATTACAAGGACAGCTCAAGGTTCTGTGCGAAGAACGGTCCAATTTGTTCGACACGTTAAGACAGTTGGAGGCAGCTAACTTTGAAGCTGAAGCCTCTGGAATTCACGATGGTGAATACCAATTGACGAAGCATGAGTTTTCCAGTTTGCGGCAGGGAAAATATAGTGAATGCAGCACAACTGAATCATCTGACGATATTGAGAAACAGGAGCTTGAGGAAGTGTCAGATGAAGATGAATTGTCATTTTTTGACACAAAAGAGTATTTTACTGAACCGAACATAAGTTGCGGGTCTGTGCAAGTTGTAAATAACACAAATAAGATCAACAAACCTCGAAGTCAATTTAGTAATGTTGAGGAGATGCACACAGAAAAGGAAATTAGTGATGTTAGATATCCACACATTGAAAGGAGAAAAGAGCTTCCTGTTCCAGTTGAGAAGGAGAAAGGAGTCAGCCTTTGGTCCATGATTAAAGACAATGTGGGAAAGGATCTCACTCGAGTTTGTCTCCCTGTGTATTTTAATGAGCCAATATCATCTCTTCAGAAGTGTTGTGAGGACATGGAGTACTCGTATCTTTTGGATCGGGCATATGAGTATGGAAAAATGGGGAATAGTCTCCAAAGGATTCTAAATGTTGCTGCATTTGCGGTTTCTGGTTATGCATCATCGGAAGGGCGGCACTGTAAGCCATTCAATCCTTTGTTAGGTGAAACTTATGAAGCCGACTATCCAGATAAAGGAATTCGCTTCTTCTCTGAAAAGGTAAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

498

Amino Acids

56.31

Weight (kDa)

6.32

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH PF00169 61 - 185 1.1e-08 PH domain
PH_11 PF15413 66 - 184 1.6e-10 Pleckstrin homology domain
Oxysterol_BP PF01237 392 - 497 3.5e-42 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 2 cut(s) 97, 321
AclWI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
AcsI RAATTY 3 cut(s) 710, 819, 1464
AcuI CTGAAG 3 cut(s) 424, 828, 1247
AcyI GRCGYC 3 cut(s) 77, 122, 252
AfaI GTAC 2 cut(s) 606, 1289
AfiI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 6 cut(s) 516, 586, 656, 803, 1127, 1417
AjnI CCWGG 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 828
AluBI AGCT 7 cut(s) 102, 545, 733, 794, 806, 931, 1141
AluI AGCT 7 cut(s) 102, 545, 733, 794, 806, 931, 1141
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 4 cut(s) 516, 628, 1232, 1343
AlwI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
Ama87I CYCGRG 1 cut(s) 1218
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 5 cut(s) 241, 277, 791, 891, 1361
ApoI RAATTY 3 cut(s) 710, 819, 1464
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 4 cut(s) 201, 345, 756, 1182
AsuC2I CCSGG 2 cut(s) 527, 559
AsuHPI GGTGA 2 cut(s) 842, 1442
AvaI CYCGRG 1 cut(s) 1218
AvaII GGWCC 4 cut(s) 201, 345, 756, 1182
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 5 cut(s) 228, 264, 803, 903, 1348
BccI CCATC 2 cut(s) 213, 821
BceAI ACGGC 3 cut(s) 170, 226, 265
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 2 cut(s) 527, 559
BcoDI GTCTC 4 cut(s) 516, 628, 1232, 1343
BfoI RGCGCY 1 cut(s) 51
BglII AGATCT 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 1289
Bme1390I CCNGG 3 cut(s) 229, 527, 559
Bme18I GGWCC 4 cut(s) 201, 345, 756, 1182
BmeT110I CYCGRG 1 cut(s) 1218
BmgT120I GGNCC 4 cut(s) 201, 345, 756, 1182
BmiI GGNNCC 2 cut(s) 236, 664
BmrFI CCNGG 3 cut(s) 229, 527, 559
BmsI GCATC 5 cut(s) 6, 63, 560, 1071, 1394
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 410, 719, 953
BpuMI CCSGG 2 cut(s) 527, 559
BsaBI GATNNNNATC 1 cut(s) 223
BsaHI GRCGYC 3 cut(s) 77, 122, 252
BsaI GGTCTC 1 cut(s) 516
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 1277, 1307
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
Bse118I RCCGGY 4 cut(s) 50, 106, 140, 354
Bse1I ACTGG 4 cut(s) 64, 666, 861, 1151
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 223
BseBI CCWGG 1 cut(s) 229
BseGI GGATG 3 cut(s) 224, 434, 463
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 159, 566, 621
BseNI ACTGG 4 cut(s) 64, 666, 861, 1151
BseRI GAGGAG 1 cut(s) 1091
BseXI GCAGC 5 cut(s) 228, 264, 803, 903, 1348
Bsh1236I CGCG 2 cut(s) 97, 321
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 1218
BsiSI CCGG 9 cut(s) 51, 71, 107, 141, 183, 281, 355, 526, 559
BslI CCNNNNNNNGG 6 cut(s) 70, 273, 354, 867, 1427, 1460
BsmAI GTCTC 4 cut(s) 516, 628, 1232, 1343
BsmI GAATGC 1 cut(s) 893
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 516
BsoBI CYCGRG 1 cut(s) 1218
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 160, 567, 622
BspFNI CGCG 2 cut(s) 97, 321
BspLI GGNNCC 2 cut(s) 236, 664
BspPI GGATC 5 cut(s) 142, 172, 219, 1218, 1311
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 4 cut(s) 50, 106, 140, 354
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 4 cut(s) 64, 666, 861, 1151
BssAI RCCGGY 4 cut(s) 50, 106, 140, 354
BssMI GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
BssNI GRCGYC 3 cut(s) 77, 122, 252
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 6 cut(s) 178, 409, 679, 756, 783, 1406
Bst6I CTCTTC 3 cut(s) 501, 651, 1266
BstACI GRCGYC 3 cut(s) 77, 122, 252
BstAPI GCANNNNNTGC 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 604
BstC8I GCNNGC 5 cut(s) 52, 104, 108, 142, 543
BstDEI CTNAG 3 cut(s) 168, 575, 630
BstENI CCTNNNNNAGG 1 cut(s) 1425
BstF5I GGATG 3 cut(s) 224, 434, 463
BstFNI CGCG 2 cut(s) 97, 321
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 9 cut(s) 137, 167, 227, 336, 463, 581, 1044, 1213, 1306
BstMAI GTCTC 4 cut(s) 516, 628, 1232, 1343
BstMBI GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
BstMWI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 227, 525, 557
BstUI CGCG 2 cut(s) 97, 321
BstV1I GCAGC 5 cut(s) 228, 264, 803, 903, 1348
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 5 cut(s) 134, 164, 224, 333, 1210
BstYI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 3 cut(s) 224, 434, 463
BtsIMutI CAGTG 4 cut(s) 572, 673, 675, 1402
Cac8I GCNNGC 5 cut(s) 52, 104, 108, 142, 543
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 4 cut(s) 50, 106, 140, 354
Cfr13I GGNCC 4 cut(s) 201, 345, 756, 1182
CseI GACGC 5 cut(s) 66, 103, 111, 241, 310
Csp6I GTAC 2 cut(s) 605, 1288
CviAII CATG 3 cut(s) 851, 1186, 1282
CviQI GTAC 2 cut(s) 605, 1288
DdeI CTNAG 3 cut(s) 168, 575, 630
DpnI GATC 9 cut(s) 136, 166, 226, 335, 462, 580, 1043, 1212, 1305
DpnII GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 3 cut(s) 501, 651, 1266
EarI CTCTTC 3 cut(s) 501, 651, 1266
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 1115
Eco47I GGWCC 4 cut(s) 201, 345, 756, 1182
Eco57I CTGAAG 3 cut(s) 424, 828, 1247
Eco88I CYCGRG 1 cut(s) 1218
EcoNI CCTNNNNNAGG 1 cut(s) 1425
EcoRI GAATTC 3 cut(s) 710, 819, 1464
EcoRII CCWGG 1 cut(s) 227
EcoRV GATATC 1 cut(s) 1115
EcoT22I ATGCAT 1 cut(s) 1387
FaeI CATG 3 cut(s) 854, 1189, 1285
FatI CATG 3 cut(s) 850, 1185, 1281
FauI CCCGC 3 cut(s) 30, 368, 1001
FauNDI CATATG 1 cut(s) 1312
FokI GGATG 3 cut(s) 231, 421, 470
GlaI GCGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 173
HapII CCGG 9 cut(s) 51, 71, 107, 141, 183, 281, 355, 526, 559
HgaI GACGC 5 cut(s) 66, 103, 111, 241, 310
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 3 cut(s) 77, 122, 252
Hin1II CATG 3 cut(s) 854, 1189, 1285
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 543
HpaII CCGG 9 cut(s) 51, 71, 107, 141, 183, 281, 355, 526, 559
HphI GGTGA 2 cut(s) 842, 1442
Hpy166II GTNNAC 2 cut(s) 201, 421
Hpy188III TCNNGA 6 cut(s) 298, 337, 427, 816, 824, 1454
Hpy8I GTNNAC 2 cut(s) 201, 421
Hpy99I CGWCG 6 cut(s) 82, 85, 182, 314, 317, 393
HpyAV CCTTC 4 cut(s) 4, 448, 1153, 1388
HpyCH4III ACNGT 6 cut(s) 178, 409, 679, 756, 783, 1406
HpyCH4IV ACGT 2 cut(s) 315, 773
HpyCH4V TGCA 8 cut(s) 19, 149, 541, 891, 1018, 1084, 1364, 1385
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
HpyF3I CTNAG 3 cut(s) 168, 575, 630
HpySE526I ACGT 2 cut(s) 315, 773
Hsp92I GRCGYC 3 cut(s) 77, 122, 252
Hsp92II CATG 3 cut(s) 854, 1189, 1285
HspAI GCGC 1 cut(s) 48
KroI GCCGGC 3 cut(s) 50, 106, 140
KroNI GCCGGC 3 cut(s) 52, 108, 142
Kzo9I GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
LmnI GCTCC 3 cut(s) 99, 195, 928
Lsp1109I GCAGC 5 cut(s) 228, 264, 803, 903, 1348
LweI GCATC 5 cut(s) 6, 63, 560, 1071, 1394
MaeII ACGT 2 cut(s) 315, 773
MalI GATC 9 cut(s) 136, 166, 226, 335, 462, 580, 1043, 1212, 1305
MbiI CCGCTC 1 cut(s) 25
MboI GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
MboII GAAGA 7 cut(s) 117, 488, 668, 761, 962, 1253, 1465
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 5 cut(s) 121, 334, 487, 571, 1179
MmeI TCCRAC 3 cut(s) 391, 435, 765
Mph1103I ATGCAT 1 cut(s) 1387
MroNI GCCGGC 3 cut(s) 50, 106, 140
MseI TTAA 4 cut(s) 503, 776, 1191, 1242
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 9 cut(s) 51, 71, 107, 141, 183, 281, 355, 526, 559
MspR9I CCNGG 3 cut(s) 229, 527, 559
MunI CAATTG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 893
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 2 cut(s) 97, 321
MwoI GCNNNNNNNGC 9 cut(s) 103, 116, 146, 179, 327, 394, 700, 1367, 1408
NaeI GCCGGC 3 cut(s) 52, 108, 142
NciI CCSGG 2 cut(s) 527, 559
NdeI CATATG 1 cut(s) 1312
NdeII GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
NgoMIV GCCGGC 3 cut(s) 50, 106, 140
NlaIII CATG 3 cut(s) 854, 1189, 1285
NlaIV GGNNCC 2 cut(s) 236, 664
NsiI ATGCAT 1 cut(s) 1387
OliI CACNNNNGTG 1 cut(s) 828
PaeR7I CTCGAG 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 86, 318
PctI GAATGC 1 cut(s) 893
PdiI GCCGGC 3 cut(s) 52, 108, 142
PfeI GAWTC 5 cut(s) 271, 286, 414, 902, 1348
PleI GAGTC 5 cut(s) 120, 334, 487, 570, 1178
PpsI GAGTC 5 cut(s) 120, 334, 487, 570, 1178
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 236, 664
PspPI GGNCC 4 cut(s) 201, 345, 756, 1182
PspXI VCTCGAGB 1 cut(s) 1218
PsuI RGATCY 5 cut(s) 134, 164, 224, 333, 1210
RsaI GTAC 2 cut(s) 606, 1289
RsaNI GTAC 2 cut(s) 605, 1288
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 4 cut(s) 503, 776, 1191, 1242
Sau3AI GATC 9 cut(s) 134, 164, 224, 333, 460, 578, 1041, 1210, 1303
Sau96I GGNCC 4 cut(s) 201, 345, 756, 1182
ScaI AGTACT 1 cut(s) 1289
SchI GAGTC 5 cut(s) 121, 334, 487, 571, 1179
ScrFI CCNGG 3 cut(s) 229, 527, 559
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 5 cut(s) 6, 63, 560, 1071, 1394
Sfr274I CTCGAG 1 cut(s) 1218
SinI GGWCC 4 cut(s) 201, 345, 756, 1182
SlaI CTCGAG 1 cut(s) 1218
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 4 cut(s) 425, 734, 932, 1218
SmoI CTYRAG 4 cut(s) 425, 734, 932, 1218
StyD4I CCNGG 3 cut(s) 227, 525, 557
TaaI ACNGT 6 cut(s) 178, 409, 679, 756, 783, 1406
TaiI ACGT 2 cut(s) 318, 776
TaqI TCGA 6 cut(s) 89, 338, 362, 768, 1054, 1219
TatI WGTACW 2 cut(s) 604, 1287
TauI GCSGC 5 cut(s) 122, 533, 648, 871, 1402
TfiI GAWTC 5 cut(s) 271, 286, 414, 902, 1348
Tru1I TTAA 4 cut(s) 503, 776, 1191, 1242
Tru9I TTAA 4 cut(s) 503, 776, 1191, 1242
TscAI CASTG 4 cut(s) 579, 673, 682, 1409
TseI GCWGC 5 cut(s) 241, 277, 791, 891, 1361
TspDTI ATGAA 5 cut(s) 423, 488, 963, 969, 1455
TspGWI ACGGA 2 cut(s) 406, 626
TspRI CASTG 4 cut(s) 579, 673, 682, 1409
VpaK11BI GGWCC 4 cut(s) 201, 345, 756, 1182
XagI CCTNNNNNAGG 1 cut(s) 1425
XapI RAATTY 3 cut(s) 710, 819, 1464
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 1218
ZrmI AGTACT 1 cut(s) 1289
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.