Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016986

Physical Location & Seq

Genomic Coordinates Forward (+)

71724921 .. 71725386

Gene Structure 466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGTCCAAGCTGAAGCTTCGTCAGAAAGATGACACATCCCCCATCGAGCCAGACTCCCTCGCCAATCACAGCTCCTCCTCCTCCAGCCACCACTTCTCCGTTGACCACAGCTCCGAATTCGAAGTCGACGACTTCTCCGTCGACAATGACTGCGATTTGCAGAACACCTCGAACTACAGGTCCACCAGTAGCATCCGGGAGCTCGATCTCATCCCCTCCGATGCAGTGATTGACCTCCGCAACATCGCCGACCGGATGATCACCGAGATTGGAGAAGCTTCCGGGGACGCCTTACCGGAAGCTGAGATTGGCATCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

108

Amino Acids

11.84

Weight (kDa)

4.27

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154631
rosa_laevigata	RLG00000010506 RLG00000010507 RLG00000025526
rosa_multiflora	Rmu_sc0000294.1_g000033 Rmu_sc0008163.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328900
rosa_rugosa	Rorug06G0377700
rosa_samantha	Rh1CG092400 Rh2BG520800 Rh3AG309700 Rh6BG501100 Rh6CG506200 Rh6DG492200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccI	GTMKAC	2 cut(s)	129, 144
AciI	CCGC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	2 cut(s)	5, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	7 cut(s)	13, 19, 75, 114, 205, 281, 305
AluI	AGCT	7 cut(s)	13, 19, 75, 114, 205, 281, 305
Alw21I	GWGCWC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	4 cut(s)	111, 143, 167, 199
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	200, 286
AsuHPI	GGTGA	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	200, 286
BfmI	CTRYAG	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	200, 286
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	200, 286
BmsI	GCATC	2 cut(s)	204, 214
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	200, 286
BsaBI	GATNNNNATC	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	5, 291
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	255, 298
BsaXI	ACNNNNNCTCC	8 cut(s)	62, 83, 92, 98, 113, 122, 128, 152
Bse1I	ACTGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	4 cut(s)	38, 195, 213, 264
BseJI	GATNNNNATC	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	3 cut(s)	67, 70, 73
Bsh1285I	CGRYCG	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	4 cut(s)	199, 256, 285, 299
BslFI	GGGAC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	208, 261
BspACI	CCGC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	208, 261
BssNI	GRCGYC	2 cut(s)	5, 291
BstACI	GRCGYC	2 cut(s)	5, 291
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	4 cut(s)	38, 195, 213, 264
BstKTI	GATC	2 cut(s)	211, 264
BstMBI	GATC	2 cut(s)	208, 261
BstMCI	CGRYCG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	198, 284
BstSFI	CTRYAG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	4 cut(s)	38, 195, 213, 264
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	1 cut(s)	299
CviJI	RGCY	9 cut(s)	13, 19, 52, 75, 90, 114, 205, 281, 305
CviKI_1	RGCY	9 cut(s)	13, 19, 52, 75, 90, 114, 205, 281, 305
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	210, 263
DpnII	GATC	2 cut(s)	208, 261
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	207
FaqI	GGGAC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	2 cut(s)	129, 144
FokI	GGATG	4 cut(s)	25, 182, 200, 271
FriOI	GRGCYC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	4 cut(s)	199, 256, 285, 299
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	2 cut(s)	5, 291
HincII	GTYRAC	3 cut(s)	106, 130, 145
HindII	GTYRAC	3 cut(s)	106, 130, 145
HindIII	AAGCTT	2 cut(s)	17, 279
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	4 cut(s)	199, 256, 285, 299
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	4 cut(s)	106, 130, 145, 186
Hpy188I	TCNGA	3 cut(s)	27, 118, 223
Hpy8I	GTNNAC	4 cut(s)	106, 130, 145, 186
Hpy99I	CGWCG	2 cut(s)	134, 146
HpyCH4V	TGCA	2 cut(s)	163, 227
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	2 cut(s)	5, 291
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	208, 261
LmnI	GCTCC	3 cut(s)	80, 119, 202
LpnPI	CCDG	8 cut(s)	66, 100, 166, 202, 212, 269, 298, 312
LweI	GCATC	2 cut(s)	204, 214
MalI	GATC	2 cut(s)	210, 263
MboI	GATC	2 cut(s)	208, 261
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	71, 88, 91, 94, 181, 229, 248
MspI	CCGG	4 cut(s)	199, 256, 285, 299
MspR9I	CCNGG	2 cut(s)	200, 286
NciI	CCSGG	2 cut(s)	200, 286
NdeII	GATC	2 cut(s)	208, 261
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 138
PfoI	TCCNGGA	1 cut(s)	198
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	207
SalI	GTCGAC	2 cut(s)	128, 143
Sau3AI	GATC	2 cut(s)	208, 261
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	200, 286
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	204, 214
SfcI	CTRYAG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	241
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	198, 284
TaqI	TCGA	6 cut(s)	48, 123, 129, 144, 173, 207
TasI	AATT	1 cut(s)	119
TscAI	CASTG	1 cut(s)	234
TspGWI	ACGGA	2 cut(s)	91, 130
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	2 cut(s)	129, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.