Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016986

Physical Location & Seq

Genomic Coordinates Reverse (-)

38881250 .. 38884114

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGAACATATCTTCATTTATGGAATCTTTGCCATCTGACTTCCTCACAATATTGCGTACAGACGGAGCATTGAGGTCTATTGCTAACAATGCTACTAAAGTAAAGTTCTCACAATTGACAGCATATGTGAGTTACCTTCAGTTAAGGCTTATTCTTGAGGTCCTAGAGCTGCTTTCTTGGATAGCAAAGTCGTTCCCTCCTCGTCGTAGTCGGAAAGACGACACCTCCCCCATCAAGCCAGACTCCCTCGCCAATCCCTGCTCCTCCTCCTCCTCCAGCCACCACTTCTCAGTTGACCATAGCAACGACCACAGCTCCGAATTCAAAGTCAATGACTTCTTCGCCGACAATGACTGCGATTTGCCGAACACCTCGAACTACAGGTCTACCAGTAGCATCCGGGAGCTCGATCTCATCCCCTCCGATGCAGTGATTGACCTCCGCAACATCGCCGACCGGATGATCACCGAGATTGGAGAAGCTTCCGGGGACGCCTTGCCGGAAGCCGAGATTGGCATCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

176

Amino Acids

19.53

Weight (kDa)

4.69

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154631
rosa_laevigata	RLG00000010506 RLG00000010507 RLG00000025526
rosa_multiflora	Rmu_sc0000294.1_g000033 Rmu_sc0008163.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328900
rosa_rugosa	Rorug06G0377700
rosa_samantha	Rh1CG092400 Rh2BG520800 Rh3AG309700 Rh6BG501100 Rh6CG506200 Rh6DG492200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	172, 318, 409, 485
AluI	AGCT	4 cut(s)	172, 318, 409, 485
Alw21I	GWGCWC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	4 cut(s)	315, 347, 371, 403
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	404, 490
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	43, 242
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	404, 490
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	382
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	404, 490
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	404, 490
BmsI	GCATC	2 cut(s)	408, 418
BpmI	CTGGAG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	404, 490
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	459
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 302, 332
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	3 cut(s)	399, 417, 468
BseJI	GATNNNNATC	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	5 cut(s)	192, 256, 259, 262, 265
BseXI	GCAGC	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	4 cut(s)	403, 460, 489, 503
BslFI	GGGAC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	412, 465
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	412, 465
BssNI	GRCGYC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	399, 417, 468
BstKTI	GATC	2 cut(s)	415, 468
BstMBI	GATC	2 cut(s)	412, 465
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	402, 488
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	399, 417, 468
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	60
CviJI	RGCY	8 cut(s)	151, 172, 241, 282, 318, 409, 485, 509
CviKI_1	RGCY	8 cut(s)	151, 172, 241, 282, 318, 409, 485, 509
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	414, 467
DpnII	GATC	2 cut(s)	412, 465
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	411
FaiI	YATR	5 cut(s)	11, 23, 127, 129, 303
FaqI	GGGAC	1 cut(s)	506
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	3 cut(s)	386, 404, 475
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	262
HapII	CCGG	4 cut(s)	403, 460, 489, 503
HgaI	GACGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	2 cut(s)	26, 245
HpaII	CCGG	4 cut(s)	403, 460, 489, 503
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	2 cut(s)	298, 390
Hpy188I	TCNGA	4 cut(s)	40, 216, 322, 427
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	298, 390
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	412, 465
LmnI	GCTCC	4 cut(s)	68, 269, 323, 406
LpnPI	CCDG	9 cut(s)	255, 274, 292, 370, 406, 416, 473, 502, 516
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	408, 418
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	414, 467
MboI	GATC	2 cut(s)	412, 465
MboII	GAAGA	2 cut(s)	6, 334
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	2 cut(s)	116, 323
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	194
MseI	TTAA	1 cut(s)	146
MspI	CCGG	4 cut(s)	403, 460, 489, 503
MspR9I	CCNGG	2 cut(s)	404, 490
MunI	CAATTG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	404, 490
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	2 cut(s)	412, 465
PfeI	GAWTC	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	412, 465
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	404, 490
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	408, 418
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	116, 323
SsiI	CCGC	1 cut(s)	445
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	402, 488
TaqI	TCGA	2 cut(s)	377, 411
TasI	AATT	2 cut(s)	116, 323
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.