Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016986

Physical Location & Seq

Genomic Coordinates Forward (+)

70088758 .. 70089555

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG501100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCCTCACCTGCCAAAAAACCGGTGAGTCTTTGCGCTATTTCTATGTTTGCCGACGATTTACTAGCCTTAATCCTCAACCGGGTGACCGAGCCGGTCGACCGAAAATCGTTCTCCGAGGTCTGCAAGCAGTGGTTTCGGGTGGAGGCATTTAGCCGATCATCGATTCGTGTTCTCGATCTCGGTTTTCTCCGTCATGTATTGTCCAGGTACCCAAACTTGGTGACATTCGAAACATCCAAGTGTGTTTTCAAAGGCCACTTCAGGTTCTTGGCCCAAACATGCCCCAAACTCGAGGACATCAACCTTAGCACCACAGAGTCAGACTGGCTCAACATATGTTTTGGGGTAGACTCTTTATGTGCTCTGTCTAATAGCTGCCCGAAATTGTCCAAGGTTTCACTTAGAGGGAGAAGGTTTTTAGGTTCAGGCATTTGGCTTAAGAAGGCACATAACTTGACGTATTTGGATTTGGGACACAACGTGGTCAGTGACGAATATCTCAAAGCAATTGGGTCTTGCAATTCCATTACCTATTTGAATTTGGAAAAGTGTCCCGGGGTTTCTGACAAGGGTTTAGGGTTTTTGGGAAATGGCTCTTGCTCAAAGACCCTGAAGACTTTGGTGCTTGCTGAGTGCAACGGCATCAGTGATATTGGGGTCTCGCATTTGCGGAATATGCGTTGCTTAGAAGACTTGAATTTGGATGGATGTTTGAGAAATGTTAGTGATATTGGAGTTAGAAAAAATATCTGGAATTCAAACCCTCAAGAAATTGAACTTGAGTCGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

265

Amino Acids

29.43

Weight (kDa)

8.54

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	17 - 54	5.1e-10	F-box
DUF7885	PF25372	58 - 242	2e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154631
rosa_laevigata	RLG00000010506 RLG00000010507 RLG00000025526
rosa_multiflora	Rmu_sc0000294.1_g000033 Rmu_sc0008163.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328900
rosa_rugosa	Rorug06G0377700
rosa_samantha	Rh1CG092400 Rh2BG520800 Rh3AG309700 Rh6BG501100 Rh6CG506200 Rh6DG492200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	3 cut(s)	99, 351, 788
AciI	CCGC	1 cut(s)	673
AcsI	RAATTY	3 cut(s)	541, 700, 757
AcuI	CTGAAG	2 cut(s)	247, 635
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	82, 220
AflII	CTTAAG	1 cut(s)	440
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	253, 541, 700, 762, 779
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	667
Ama87I	CYCGRG	2 cut(s)	293, 557
AoxI	GGCC	2 cut(s)	256, 273
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	3 cut(s)	541, 700, 757
AsiGI	ACCGGT	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	3 cut(s)	83, 558, 559
AsuHPI	GGTGA	3 cut(s)	37, 97, 235
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	2 cut(s)	293, 557
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	623, 699
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	3 cut(s)	83, 558, 559
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	4 cut(s)	83, 208, 558, 559
BmeT110I	CYCGRG	2 cut(s)	293, 557
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	4 cut(s)	83, 208, 558, 559
BmsI	GCATC	1 cut(s)	654
BpiI	GAAGAC	2 cut(s)	623, 699
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	3 cut(s)	83, 558, 559
Bsa29I	ATCGAT	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	667
BsaJI	CCNNGG	4 cut(s)	117, 393, 557, 558
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 220
Bse118I	RCCGGY	2 cut(s)	22, 94
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	164
BseDI	CCNNGG	4 cut(s)	117, 393, 557, 558
BseGI	GGATG	3 cut(s)	236, 712, 716
BseLI	CCNNNNNNNGG	2 cut(s)	82, 220
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	365
Bsh1285I	CGRYCG	2 cut(s)	99, 103
BshFI	GGCC	2 cut(s)	258, 275
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	22
BshVI	ATCGAT	1 cut(s)	164
BsiEI	CGRYCG	2 cut(s)	99, 103
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	2 cut(s)	293, 557
BsiSI	CCGG	4 cut(s)	23, 82, 95, 558
BslFI	GGGAC	2 cut(s)	489, 540
BslI	CCNNNNNNNGG	2 cut(s)	82, 220
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	2 cut(s)	489, 540
BsnI	GGCC	2 cut(s)	258, 275
Bso31I	GGTCTC	1 cut(s)	667
BsoBI	CYCGRG	2 cut(s)	293, 557
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	158, 178
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	258, 275
BspCNI	CTCAG	1 cut(s)	625
BspDI	ATCGAT	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	667
BsrFI	RCCGGY	2 cut(s)	22, 94
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	2 cut(s)	22, 94
BssECI	CCNNGG	4 cut(s)	117, 393, 557, 558
BssMI	GATC	2 cut(s)	158, 178
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	128, 630
BstDEI	CTNAG	4 cut(s)	308, 404, 633, 688
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	3 cut(s)	236, 712, 716
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	161, 181
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	2 cut(s)	158, 178
BstMCI	CGRYCG	2 cut(s)	99, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	285
BstPI	GGTNACC	1 cut(s)	85
BstSCI	CCNGG	4 cut(s)	81, 206, 556, 557
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	2 cut(s)	623, 699
Bsu15I	ATCGAT	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	258, 275
BsuTUI	ATCGAT	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	236, 712, 716
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	137, 496, 655
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	128, 630
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	22, 94
Cfr13I	GGNCC	1 cut(s)	274
Cfr9I	CCCGGG	1 cut(s)	557
ClaI	ATCGAT	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	197, 282
CviJI	RGCY	9 cut(s)	68, 94, 156, 258, 275, 331, 378, 439, 597
CviKI_1	RGCY	9 cut(s)	68, 94, 156, 258, 275, 331, 378, 439, 597
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	308, 404, 633, 688
DpnI	GATC	2 cut(s)	160, 180
DpnII	GATC	2 cut(s)	158, 178
DraIII	CACNNNGTG	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	247, 635
Eco88I	CYCGRG	2 cut(s)	293, 557
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	200, 285
FaiI	YATR	9 cut(s)	47, 198, 283, 338, 340, 361, 453, 680, 796
FaqI	GGGAC	2 cut(s)	489, 540
FatI	CATG	2 cut(s)	196, 281
FauNDI	CATATG	1 cut(s)	338
FblI	GTMKAC	3 cut(s)	99, 351, 788
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	3 cut(s)	223, 719, 723
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	258, 275
HapII	CCGG	4 cut(s)	23, 82, 95, 558
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	200, 285
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	2 cut(s)	100, 789
HindII	GTYRAC	2 cut(s)	100, 789
HinfI	GANTC	5 cut(s)	28, 166, 320, 353, 785
HpaII	CCGG	4 cut(s)	23, 82, 95, 558
HphI	GGTGA	3 cut(s)	37, 97, 235
Hpy166II	GTNNAC	3 cut(s)	100, 352, 789
Hpy188I	TCNGA	3 cut(s)	118, 325, 568
Hpy188III	TCNNGA	3 cut(s)	176, 754, 770
Hpy8I	GTNNAC	3 cut(s)	100, 352, 789
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	408, 439
HpyCH4IV	ACGT	2 cut(s)	461, 483
HpyCH4V	TGCA	4 cut(s)	126, 522, 639, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpyF3I	CTNAG	4 cut(s)	308, 404, 633, 688
HpySE526I	ACGT	2 cut(s)	461, 483
Hsp92II	CATG	2 cut(s)	200, 285
HspAI	GCGC	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	158, 178
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	654
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	2 cut(s)	461, 483
MaeIII	GTNAC	3 cut(s)	85, 223, 491
MalI	GATC	2 cut(s)	160, 180
MboI	GATC	2 cut(s)	158, 178
MboII	GAAGA	2 cut(s)	628, 704
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	7 cut(s)	386, 510, 523, 541, 700, 757, 774
MlyI	GAGTC	4 cut(s)	37, 329, 347, 794
MnlI	CCTC	7 cut(s)	16, 86, 112, 139, 289, 401, 777
MseI	TTAA	2 cut(s)	71, 441
MslI	CAYNNNNRTG	1 cut(s)	241
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	4 cut(s)	23, 82, 95, 558
MspR9I	CCNGG	4 cut(s)	83, 208, 558, 559
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	679
NciI	CCSGG	3 cut(s)	83, 558, 559
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	2 cut(s)	158, 178
NlaIII	CATG	2 cut(s)	200, 285
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	85, 223, 491
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	166
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	4 cut(s)	36, 328, 347, 793
PpsI	GAGTC	4 cut(s)	36, 328, 347, 793
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	293
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	241
SalI	GTCGAC	2 cut(s)	98, 787
SaqAI	TTAA	2 cut(s)	71, 441
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	2 cut(s)	158, 178
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	4 cut(s)	37, 329, 347, 794
ScrFI	CCNGG	4 cut(s)	83, 208, 558, 559
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	293
SmaI	CCCGGG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	4 cut(s)	293, 440, 768, 782
SmoI	CTYRAG	4 cut(s)	293, 440, 768, 782
Sse9I	AATT	7 cut(s)	386, 510, 523, 541, 700, 757, 774
SsiI	CCGC	1 cut(s)	673
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	4 cut(s)	81, 206, 556, 557
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	2 cut(s)	464, 486
TaqI	TCGA	6 cut(s)	99, 164, 177, 231, 294, 788
TaqII	GACCGA	2 cut(s)	104, 117
TasI	AATT	7 cut(s)	386, 510, 523, 541, 700, 757, 774
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	71, 441
Tru9I	TTAA	2 cut(s)	71, 441
TscAI	CASTG	3 cut(s)	137, 496, 655
TseFI	GTSAC	3 cut(s)	85, 223, 491
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	3 cut(s)	85, 223, 491
TspGWI	ACGGA	1 cut(s)	182
TspMI	CCCGGG	1 cut(s)	557
TspRI	CASTG	3 cut(s)	137, 496, 655
Vha464I	CTTAAG	1 cut(s)	440
XapI	RAATTY	3 cut(s)	541, 700, 757
XceI	RCATGY	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	293
XmaI	CCCGGG	1 cut(s)	557
XmiI	GTMKAC	3 cut(s)	99, 351, 788
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.