Rroxscaffold_4G00328900

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016986
Physical Location & Seq
Reverse (-)
62025183 .. 62027731
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328900.1

Sequence Viewer

Length: 555 bp
ATGACAAGGGAGGATGCTTGTGGGCTTCCAGCCATTTTACTTGCATCAATAAGAAAATATTATTTTGACAATGGAGATGCTTTCGGTATTCAGCCATGGACAATGGCTCCCGTGAGCAGCTTGCACTTGTTTAATAAGAAAAGATTTTGTCTCAAGACTATTGCCGTTATTATTGCCCCGGACTCCCTCGCCAATCCCGGCTCCTCCTCCTCCGGCCACCACTTCTCCGTTGACCACGGCAACGACCACAACTCCGAATTCGAAGTGGATGACTTCTCCGCCAACGATGATTGCGATTTGCCGAACACCTCGAACTACGGGTCTACCGGTAGCATTCGGGAGCTCGATCTCATCCCCTCCGATGCGGTGATTGACCTCCGCAACATCGCCGACCGGTTGATCACCGAGATTGGAGAAGCTTCGGGGGACGCCTTGCGGAAGCCTAGATTGGCGTCTTGGACCGACCGGATGTTCGAGGCAAGGAGAGAGAATTTCGATTTGTTGACTTGGGTGCCCAAATCGGATTTATTTTATTTATTTATTTTTTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

184

Amino Acids

20.62

Weight (kDa)

4.91

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 511
AccI GTMKAC 1 cut(s) 323
AciI CCGC 4 cut(s) 279, 365, 379, 436
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 2 cut(s) 257, 490
AcyI GRCGYC 2 cut(s) 429, 452
AgeI ACCGGT 2 cut(s) 326, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 3 cut(s) 120, 343, 419
AluI AGCT 3 cut(s) 120, 343, 419
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 257, 490
ArsI GACNNNNNNTTYG 4 cut(s) 305, 337, 455, 487
AsiGI ACCGGT 2 cut(s) 326, 393
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 2 cut(s) 179, 198
AsuHPI GGTGA 2 cut(s) 379, 394
AsuII TTCGAA 1 cut(s) 261
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 516
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 129
BceAI ACGGC 2 cut(s) 149, 253
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 2 cut(s) 179, 198
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 444
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 179, 198
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 3 cut(s) 108, 202, 513
BmrFI CCNGG 2 cut(s) 179, 198
BmsI GCATC 4 cut(s) 4, 53, 67, 352
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 179, 198
BsaHI GRCGYC 2 cut(s) 429, 452
BsaJI CCNNGG 3 cut(s) 95, 177, 235
BsaWI WCCGGW 3 cut(s) 326, 393, 465
BsaXI ACNNNNNCTCC 6 cut(s) 91, 121, 209, 236, 239, 266
Bse118I RCCGGY 2 cut(s) 326, 393
BseDI CCNNGG 3 cut(s) 95, 177, 235
BseGI GGATG 4 cut(s) 19, 274, 351, 474
BseRI GAGGAG 3 cut(s) 193, 196, 199
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 1 cut(s) 129
Bsh1285I CGRYCG 2 cut(s) 394, 466
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 511
BshTI ACCGGT 2 cut(s) 326, 393
BsiEI CGRYCG 2 cut(s) 394, 466
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 6 cut(s) 179, 198, 213, 327, 394, 466
BslFI GGGAC 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 345, 516
Bsp143I GATC 2 cut(s) 346, 399
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 4 cut(s) 279, 365, 379, 436
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 108, 202, 513
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 511
BsrFI RCCGGY 2 cut(s) 326, 393
BssAI RCCGGY 2 cut(s) 326, 393
BssECI CCNNGG 3 cut(s) 95, 177, 235
BssMI GATC 2 cut(s) 346, 399
BssNI GRCGYC 2 cut(s) 429, 452
BssT1I CCWWGG 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 429, 452
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 122
BstDSI CCRYGG 2 cut(s) 95, 235
BstF5I GGATG 4 cut(s) 19, 274, 351, 474
BstKTI GATC 2 cut(s) 349, 402
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 346, 399
BstMCI CGRYCG 2 cut(s) 394, 466
BstSCI CCNGG 2 cut(s) 177, 196
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 2 cut(s) 95, 235
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 4 cut(s) 19, 274, 351, 474
Cac8I GCNNGC 1 cut(s) 122
Cfr10I RCCGGY 2 cut(s) 326, 393
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 2 cut(s) 437, 441
CspAI ACCGGT 2 cut(s) 326, 393
CviAII CATG 1 cut(s) 96
DpnI GATC 2 cut(s) 348, 401
DpnII GATC 2 cut(s) 346, 399
EaeI YGGCCR 1 cut(s) 214
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 1 cut(s) 99
FaiI YATR 1 cut(s) 97
FaqI GGGAC 1 cut(s) 440
FatI CATG 1 cut(s) 95
FbaI TGATCA 1 cut(s) 399
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 4 cut(s) 26, 281, 338, 481
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 444
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 216
HapII CCGG 6 cut(s) 179, 198, 213, 327, 394, 466
HgaI GACGC 2 cut(s) 437, 441
Hin1I GRCGYC 2 cut(s) 429, 452
Hin1II CATG 1 cut(s) 99
HincII GTYRAC 2 cut(s) 232, 504
HindII GTYRAC 2 cut(s) 232, 504
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 1 cut(s) 182
HpaII CCGG 6 cut(s) 179, 198, 213, 327, 394, 466
HphI GGTGA 2 cut(s) 379, 394
Hpy166II GTNNAC 3 cut(s) 232, 324, 504
Hpy188I TCNGA 3 cut(s) 256, 361, 523
Hpy188III TCNNGA 2 cut(s) 154, 338
Hpy8I GTNNAC 3 cut(s) 232, 324, 504
HpyCH4V TGCA 2 cut(s) 44, 124
Hsp92I GRCGYC 2 cut(s) 429, 452
Hsp92II CATG 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 2 cut(s) 346, 399
LmnI GCTCC 3 cut(s) 112, 206, 340
LpnPI CCDG 7 cut(s) 42, 192, 211, 226, 340, 407, 479
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 4 cut(s) 4, 53, 67, 352
MaeI CTAG 1 cut(s) 444
MalI GATC 2 cut(s) 348, 401
MboI GATC 2 cut(s) 346, 399
MhlI GDGCHC 2 cut(s) 345, 516
MluCI AATT 2 cut(s) 257, 490
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 9 cut(s) 4, 197, 214, 217, 220, 319, 367, 386, 469
MseI TTAA 2 cut(s) 132, 549
MspI CCGG 6 cut(s) 179, 198, 213, 327, 394, 466
MspR9I CCNGG 2 cut(s) 179, 198
Mva1269I GAATGC 1 cut(s) 333
NciI CCSGG 2 cut(s) 179, 198
NcoI CCATGG 1 cut(s) 95
NdeII GATC 2 cut(s) 346, 399
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 3 cut(s) 108, 202, 513
NspV TTCGAA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 333
PinAI ACCGGT 2 cut(s) 326, 393
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 108, 202, 513
PspPI GGNCC 1 cut(s) 459
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 132, 549
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 2 cut(s) 346, 399
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 179, 198
SduI GDGCHC 2 cut(s) 345, 516
SetI ASST 5 cut(s) 122, 311, 345, 378, 421
SfaNI GCATC 4 cut(s) 4, 53, 67, 352
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 257, 490
SsiI CCGC 4 cut(s) 279, 365, 379, 436
SspI AATATT 1 cut(s) 59
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 177, 196
StyI CCWWGG 1 cut(s) 95
TaqI TCGA 5 cut(s) 261, 311, 345, 474, 495
TaqII GACCGA 1 cut(s) 476
TasI AATT 2 cut(s) 257, 490
Tru1I TTAA 2 cut(s) 132, 549
Tru9I TTAA 2 cut(s) 132, 549
TseI GCWGC 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 459
XapI RAATTY 2 cut(s) 257, 490
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.