RLG00000010507

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016986
Physical Location & Seq
Reverse (-)
2214430 .. 2215645
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010507

Sequence Viewer

Length: 549 bp
ATGTCCTCACTTGCCAAAAAACCGGTGAATCTATGCGCTATTTCTATGTTTGCCGACGATTTACTAGCCTTAATCCTCAACTGGGTCACTGAGCCGGTCGACAGAAAATTGTTCTCCGAGGTCTGCAAGCAGTGGTTTCTGGTGGAGGCATTTAGCCGATCATCGATTCGTGTTCTCGATCTCGGTTTTCTCCGTCATGTATTGTCCAGGTACCCAAACTTGGTGACATTCGAAACATCCAAGTGTGTTTTCAAAGGCCACCTCAGGTTCTTGGCCCAAACATGCCCCAAACTCGAGGCCATCAACCTTTCGCTCCCTCCTCGTCAGAGTCGGAAAGGCGACACCTCCCCCATCGAGCCAGACTCCCTCTCCAATCCCGGCTCCTCCTCCTCCAGCCACCAGTTCTCCGTTGACCACAGCAACGATCACAGCTCCGAATTCGAAGTCGACGACTTCGAAGCCGACGATGACTGCGATTTGCCGAACACCTCGAACTACAGGTCCACCAGTAGCATCCGGGAGTTCGATCTCATCCCTCTGATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

183

Amino Acids

20.5

Weight (kDa)

5.17

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 17 - 54 2e-08 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 2 cut(s) 99, 447
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 82, 220
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 256, 273, 297
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 4 cut(s) 429, 461, 485, 517
AsiGI ACCGGT 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 274, 501
AsuC2I CCSGG 2 cut(s) 378, 518
AsuHPI GGTGA 2 cut(s) 37, 235
AsuII TTCGAA 3 cut(s) 231, 441, 456
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 501
AxyI CCTNAGG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 210
BccI CCATC 2 cut(s) 308, 359
BciT130I CCWGG 1 cut(s) 208
BcnI CCSGG 2 cut(s) 378, 518
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 496
Bme1390I CCNGG 3 cut(s) 208, 378, 518
Bme18I GGWCC 1 cut(s) 501
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 274, 501
BmiI GGNNCC 2 cut(s) 212, 382
BmrFI CCNGG 3 cut(s) 208, 378, 518
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 522, 531
BmuI ACTGGG 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 376
Bpu14I TTCGAA 3 cut(s) 231, 441, 456
BpuMI CCSGG 2 cut(s) 378, 518
Bsa29I ATCGAT 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 22
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 220
Bse118I RCCGGY 2 cut(s) 22, 94
Bse1I ACTGG 3 cut(s) 86, 400, 507
Bse21I CCTNAGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 236, 513, 531
BseLI CCNNNNNNNGG 2 cut(s) 82, 220
BseMII CTCAG 2 cut(s) 81, 277
BseNI ACTGG 3 cut(s) 86, 400, 507
BseRI GAGGAG 4 cut(s) 309, 373, 376, 379
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 258, 275, 299
BshNI GGYRCC 1 cut(s) 210
BshTI ACCGGT 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 23, 95, 378, 517
BslI CCNNNNNNNGG 2 cut(s) 82, 220
BsnI GGCC 3 cut(s) 258, 275, 299
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 3 cut(s) 231, 441, 456
Bsp143I GATC 4 cut(s) 158, 178, 424, 526
BspANI GGCC 3 cut(s) 258, 275, 299
BspCNI CTCAG 2 cut(s) 82, 276
BspDI ATCGAT 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 212, 382
BspT104I TTCGAA 3 cut(s) 231, 441, 456
BspT107I GGYRCC 1 cut(s) 210
BsrFI RCCGGY 2 cut(s) 22, 94
BsrI ACTGG 3 cut(s) 86, 400, 507
BssAI RCCGGY 2 cut(s) 22, 94
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 4 cut(s) 158, 178, 424, 526
Bst2UI CCWGG 1 cut(s) 208
BstBI TTCGAA 3 cut(s) 231, 441, 456
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 90, 263
BstF5I GGATG 3 cut(s) 236, 513, 531
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 161, 181, 427, 529
BstMBI GATC 4 cut(s) 158, 178, 424, 526
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 206, 376, 516
BstSFI CTRYAG 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 164
Bsu36I CCTNAGG 1 cut(s) 263
BsuRI GGCC 3 cut(s) 258, 275, 299
BsuTUI ATCGAT 1 cut(s) 164
BtsCI GGATG 3 cut(s) 236, 513, 531
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 87, 137
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 2 cut(s) 22, 94
Cfr13I GGNCC 2 cut(s) 274, 501
ClaI ATCGAT 1 cut(s) 164
Csp6I GTAC 1 cut(s) 211
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 3 cut(s) 197, 282, 546
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 90, 263
DpnI GATC 4 cut(s) 160, 180, 426, 528
DpnII GATC 4 cut(s) 158, 178, 424, 526
Eco47I GGWCC 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 200, 285, 549
FaiI YATR 5 cut(s) 34, 47, 198, 283, 547
FatI CATG 3 cut(s) 196, 281, 545
FblI GTMKAC 2 cut(s) 99, 447
FokI GGATG 3 cut(s) 223, 500, 518
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 3 cut(s) 258, 275, 299
HapII CCGG 4 cut(s) 23, 95, 378, 517
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 200, 285, 549
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 3 cut(s) 100, 412, 448
HindII GTYRAC 3 cut(s) 100, 412, 448
HinfI GANTC 4 cut(s) 28, 166, 328, 362
HpaII CCGG 4 cut(s) 23, 95, 378, 517
HphI GGTGA 2 cut(s) 37, 235
Hpy166II GTNNAC 4 cut(s) 100, 412, 448, 504
Hpy188I TCNGA 5 cut(s) 118, 327, 333, 436, 540
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 4 cut(s) 100, 412, 448, 504
Hpy99I CGWCG 3 cut(s) 59, 452, 467
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 90, 263
Hsp92II CATG 3 cut(s) 200, 285, 549
HspAI GCGC 1 cut(s) 36
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 158, 178, 424, 526
LmnI GCTCC 3 cut(s) 318, 386, 437
LweI GCATC 2 cut(s) 522, 531
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 85, 223
MalI GATC 4 cut(s) 160, 180, 426, 528
MboI GATC 4 cut(s) 158, 178, 424, 526
MluCI AATT 2 cut(s) 107, 437
MlyI GAGTC 2 cut(s) 337, 356
MmeI TCCRAC 1 cut(s) 311
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 241
MspI CCGG 4 cut(s) 23, 95, 378, 517
MspR9I CCNGG 3 cut(s) 208, 378, 518
MvaI CCWGG 1 cut(s) 208
NciI CCSGG 2 cut(s) 378, 518
NdeII GATC 4 cut(s) 158, 178, 424, 526
NlaIII CATG 3 cut(s) 200, 285, 549
NlaIV GGNNCC 2 cut(s) 212, 382
NmuCI GTSAC 2 cut(s) 85, 223
NspI RCATGY 1 cut(s) 285
NspV TTCGAA 3 cut(s) 231, 441, 456
PaeR7I CTCGAG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 4 cut(s) 447, 453, 462, 471
PfeI GAWTC 2 cut(s) 28, 166
PfoI TCCNGGA 1 cut(s) 516
PinAI ACCGGT 1 cut(s) 22
PleI GAGTC 2 cut(s) 336, 356
PpsI GAGTC 2 cut(s) 336, 356
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 212, 382
PspPI GGNCC 2 cut(s) 274, 501
PspXI VCTCGAGB 1 cut(s) 293
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 241
SalI GTCGAC 2 cut(s) 98, 446
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 4 cut(s) 158, 178, 424, 526
Sau96I GGNCC 2 cut(s) 274, 501
SchI GAGTC 2 cut(s) 337, 356
ScrFI CCNGG 3 cut(s) 208, 378, 518
SetI ASST 9 cut(s) 123, 212, 264, 269, 309, 347, 434, 491, 503
SfaNI GCATC 2 cut(s) 522, 531
SfcI CTRYAG 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 3 cut(s) 231, 441, 456
SinI GGWCC 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 107, 437
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 206, 376, 516
TasI AATT 2 cut(s) 107, 437
TfiI GAWTC 2 cut(s) 28, 166
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 94, 137
TseFI GTSAC 2 cut(s) 85, 223
Tsp45I GTSAC 2 cut(s) 85, 223
TspGWI ACGGA 2 cut(s) 182, 397
TspRI CASTG 2 cut(s) 94, 137
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 99, 447
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.