Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016986

Physical Location & Seq

Genomic Coordinates Forward (+)

19770306 .. 19772118

Gene Structure 1813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCGTCCAAGCCTGAAGCTCTGGTAGGAGCTACCGGAGTTGAACTCAGTCTCTCTCTCTCTCTCCCCCAGTTGCTCCCTCCTCGTCGGAGTCGGAAAGACGACACCTCCCCCATCGAGCCAGACTCCCTCGCCAATCCCGGCTCCTCCTCCTCCAGCCACCACTTCTCCGCTAACCACAGTAACGACCACAGCTCCGAATTCGAAGTCGACGACTTCTCTGCCGACGATGACTGCGCTTTGCCGAACACCTCGAACTACAGGTCCACCAGTAGCATCTGGGAGCTCGATCTCATCCCCTCCGATGCAGTGATTGACCTCCGCAACATCGCCGACCGGATGATCACCGAGATTGGAGAAGCTTCCGGGGACGCCTTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

127

Amino Acids

13.59

Weight (kDa)

4.28

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016986)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154631
rosa_laevigata	RLG00000010506 RLG00000010507 RLG00000025526
rosa_multiflora	Rmu_sc0000294.1_g000033 Rmu_sc0008163.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328900
rosa_rugosa	Rorug06G0377700
rosa_samantha	Rh1CG092400 Rh2BG520800 Rh3AG309700 Rh6BG501100 Rh6CG506200 Rh6DG492200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	2 cut(s)	171, 322
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	2 cut(s)	5, 372
AgsI	TTSAA	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	5 cut(s)	20, 32, 195, 286, 362
AluI	AGCT	5 cut(s)	20, 32, 195, 286, 362
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	4 cut(s)	192, 224, 248, 280
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	2 cut(s)	141, 367
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	141, 367
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	141, 367
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	141, 367
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	285, 295
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	4 cut(s)	30, 62, 110, 142
BpmI	CTGGAG	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	141, 367
BsaHI	GRCGYC	2 cut(s)	5, 372
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	2 cut(s)	35, 336
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 152, 179, 182, 209
Bse1I	ACTGG	2 cut(s)	70, 270
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	294, 345
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	70, 270
BseRI	GAGGAG	4 cut(s)	72, 136, 139, 142
Bsh1285I	CGRYCG	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	4 cut(s)	36, 141, 337, 366
BsmAI	GTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	289, 342
BspACI	CCGC	2 cut(s)	171, 322
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	145
BspT104I	TTCGAA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	70, 270
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	289, 342
BssNI	GRCGYC	2 cut(s)	5, 372
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	5, 372
BstBI	TTCGAA	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	294, 345
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	292, 345
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	289, 342
BstMCI	CGRYCG	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	139, 365
BstSFI	CTRYAG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	294, 345
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	264
CviJI	RGCY	9 cut(s)	13, 20, 32, 121, 144, 159, 195, 286, 362
CviKI_1	RGCY	9 cut(s)	13, 20, 32, 121, 144, 159, 195, 286, 362
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	291, 344
DpnII	GATC	2 cut(s)	289, 342
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	2 cut(s)	281, 352
FriOI	GRGCYC	1 cut(s)	288
GlaI	GCGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	139
HapII	CCGG	4 cut(s)	36, 141, 337, 366
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	2 cut(s)	5, 372
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	91, 125
HpaII	CCGG	4 cut(s)	36, 141, 337, 366
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	211, 267
Hpy188I	TCNGA	4 cut(s)	90, 96, 199, 304
Hpy8I	GTNNAC	2 cut(s)	211, 267
Hpy99I	CGWCG	3 cut(s)	90, 215, 230
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	5, 372
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	289, 342
LmnI	GCTCC	5 cut(s)	29, 81, 149, 200, 283
LweI	GCATC	2 cut(s)	285, 295
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	291, 344
MboI	GATC	2 cut(s)	289, 342
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	100, 119
MmeI	TCCRAC	2 cut(s)	68, 74
MseI	TTAA	1 cut(s)	382
MspI	CCGG	4 cut(s)	36, 141, 337, 366
MspR9I	CCNGG	2 cut(s)	141, 367
NciI	CCSGG	2 cut(s)	141, 367
NdeII	GATC	2 cut(s)	289, 342
NlaIV	GGNNCC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PleI	GAGTC	2 cut(s)	99, 119
PpsI	GAGTC	2 cut(s)	99, 119
Psp124BI	GAGCTC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	289, 342
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	100, 119
ScrFI	CCNGG	2 cut(s)	141, 367
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	22, 34, 110, 197, 254, 266, 288, 321, 364
SfaNI	GCATC	2 cut(s)	285, 295
SfcI	CTRYAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	171, 322
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	139, 365
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	5 cut(s)	117, 204, 210, 254, 288
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TscAI	CASTG	1 cut(s)	315
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.