Rmu_sc0008163.1_g000002

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008163.1
OG0016986
Physical Location & Seq
Forward (+)
17605 .. 18357
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008163.1_g000002.1.cds

Sequence Viewer

Length: 639 bp
atgtcccaaaatcgaggtcatcaacttcaacagcccggtgtttctcagcaacctatttccgctcgacaatctactcgctctgtcaaagctatccaaggtttcgctcagaaggagaagttccgatgtggaaaactgttgggggatcacagacgacagtttagcacttttggcaaatggggcttcctcaaaaaccctcaagaaattggtgcttgcttgctgctcaagcatcaccgattatggggtctctccgtctctcttttgcaggaaatgtgttgcttggaagagctgaatttggaaagctgcggggataaagtcactaatgtaggagttttagcaatctgcggaattcaaaccctcaagaaattgaacttgagttggttgcgcaatgtctccgaccaaagcattgttgctctggctgagaattgccacaacttggagacgctagacttaaccggatgttgtgtgactagtgcttgtattcgtgcattctcgagtcacaggtgcttagaatctcttgttatgagcttaaatatgtatcttcattggggtgatgtgaaacacatggcgcttggatgccagtcgttgaagactattactattgtgacgagtggaaattatgtttccatcattccatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

212

Amino Acids

23.55

Weight (kDa)

8.92

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 3 cut(s) 60, 303, 342
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 2 cut(s) 289, 345
AfiI CCNNNNNNNGG 2 cut(s) 238, 433
AgsI TTSAA 4 cut(s) 29, 350, 367, 586
AhlI ACTAGT 1 cut(s) 467
AluBI AGCT 4 cut(s) 89, 286, 300, 525
AluI AGCT 4 cut(s) 89, 286, 300, 525
Alw26I GTCTC 4 cut(s) 248, 256, 394, 431
AlwI GGATC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 217, 300
ApoI RAATTY 2 cut(s) 289, 345
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspLEI GCGC 2 cut(s) 384, 568
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 221, 560
AvaI CYCGRG 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 593
BbvI GCAGC 2 cut(s) 204, 287
BccI CCATC 1 cut(s) 632
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 4 cut(s) 248, 256, 394, 431
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 2 cut(s) 443, 468
BfoI RGCGCY 1 cut(s) 569
BisI GCNGC 2 cut(s) 218, 301
BlsI GCNGC 2 cut(s) 219, 302
Bme1390I CCNGG 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 235, 563
BpiI GAAGAC 1 cut(s) 593
BpuEI CTTGAG 4 cut(s) 180, 206, 341, 391
BpuMI CCSGG 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 452
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 433
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 2 cut(s) 461, 578
BseLI CCNNNNNNNGG 2 cut(s) 238, 433
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 3 cut(s) 59, 119, 408
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 2 cut(s) 204, 287
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 2 cut(s) 36, 453
BslI CCNNNNNNNGG 2 cut(s) 238, 433
BsmAI GTCTC 4 cut(s) 248, 256, 394, 431
BsmBI CGTCTC 2 cut(s) 256, 431
BsmI GAATGC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 3 cut(s) 60, 303, 342
BspCNI CTCAG 3 cut(s) 58, 118, 409
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 135, 156
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 211, 215
BstDEI CTNAG 4 cut(s) 45, 105, 417, 505
BstF5I GGATG 2 cut(s) 461, 578
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 2 cut(s) 384, 568
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 4 cut(s) 248, 256, 394, 431
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 168, 177, 223
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 204, 287
BstV2I GAAGAC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 461, 578
Cac8I GCNNGC 2 cut(s) 211, 215
CfoI GCGC 2 cut(s) 384, 568
CseI GACGC 1 cut(s) 448
CviAII CATG 2 cut(s) 562, 633
CviJI RGCY 7 cut(s) 34, 89, 180, 286, 300, 416, 525
CviKI_1 RGCY 7 cut(s) 34, 89, 180, 286, 300, 416, 525
DdeI CTNAG 4 cut(s) 45, 105, 417, 505
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 2 cut(s) 256, 431
FaeI CATG 2 cut(s) 565, 636
FaiI YATR 6 cut(s) 238, 521, 533, 563, 618, 634
FatI CATG 2 cut(s) 561, 632
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 218, 301
FokI GGATG 2 cut(s) 468, 585
Fsp4HI GCNGC 2 cut(s) 218, 301
FspBI CTAG 2 cut(s) 443, 468
FspI TGCGCA 1 cut(s) 383
GlaI GCGC 2 cut(s) 383, 567
GluI GCNGC 2 cut(s) 218, 301
HaeII RGCGCY 1 cut(s) 569
HapII CCGG 2 cut(s) 36, 453
HgaI GACGC 1 cut(s) 448
HhaI GCGC 2 cut(s) 384, 568
Hin1II CATG 2 cut(s) 565, 636
Hin6I GCGC 2 cut(s) 382, 566
HinP1I GCGC 2 cut(s) 382, 566
HinfI GANTC 2 cut(s) 493, 509
HpaII CCGG 2 cut(s) 36, 453
HphI GGTGA 2 cut(s) 221, 560
Hpy188I TCNGA 3 cut(s) 108, 122, 394
Hpy188III TCNNGA 3 cut(s) 197, 358, 490
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 135, 156
HpyCH4V TGCA 2 cut(s) 262, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 177, 223
HpyF3I CTNAG 4 cut(s) 45, 105, 417, 505
Hsp92II CATG 2 cut(s) 565, 636
HspAI GCGC 2 cut(s) 382, 566
Kzo9I GATC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 276
LpnPI CCDG 6 cut(s) 49, 248, 398, 466, 484, 590
Lsp1109I GCAGC 2 cut(s) 204, 287
LweI GCATC 2 cut(s) 235, 563
MaeI CTAG 2 cut(s) 443, 468
MaeIII GTNAC 4 cut(s) 313, 463, 494, 601
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 293, 530, 598
MluCI AATT 6 cut(s) 201, 289, 345, 362, 421, 613
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 4 cut(s) 8, 194, 204, 365
MseI TTAA 2 cut(s) 449, 527
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 2 cut(s) 36, 453
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 485
MwoI GCNNNNNNNGC 3 cut(s) 168, 177, 223
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 565, 636
NmuCI GTSAC 4 cut(s) 313, 463, 494, 601
NsbI TGCGCA 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 276
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 2 cut(s) 219, 302
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 449, 527
SatI GCNGC 2 cut(s) 218, 301
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 36
SetI ASST 8 cut(s) 19, 55, 91, 100, 288, 302, 503, 527
SfaNI GCATC 2 cut(s) 235, 563
Sfr274I CTCGAG 1 cut(s) 490
SlaI CTCGAG 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 5 cut(s) 195, 221, 356, 370, 490
SmoI CTYRAG 5 cut(s) 195, 221, 356, 370, 490
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 6 cut(s) 201, 289, 345, 362, 421, 613
SsiI CCGC 3 cut(s) 60, 303, 342
SspMI CTAG 2 cut(s) 443, 468
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 135, 156
TaqI TCGA 3 cut(s) 13, 64, 491
TasI AATT 6 cut(s) 201, 289, 345, 362, 421, 613
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 449, 527
Tru9I TTAA 2 cut(s) 449, 527
TseFI GTSAC 4 cut(s) 313, 463, 494, 601
TseI GCWGC 2 cut(s) 217, 300
Tsp45I GTSAC 4 cut(s) 313, 463, 494, 601
TspDTI ATGAA 1 cut(s) 530
TspGWI ACGGA 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 433
XapI RAATTY 2 cut(s) 289, 345
XhoI CTCGAG 1 cut(s) 490
XspI CTAG 2 cut(s) 443, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.