Rh2BG520800

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016986
Physical Location & Seq
Forward (+)
73105054 .. 73106604
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG520800.1

Sequence Viewer

Length: 444 bp
ATGGATTCCGATACGGATTTCGACGATCGCGGACGATACTGGTTCGCGAAGTGGATTCGGTCCGGAGTGGGAGGTTGGTGGCGGACTCTGGCTGGGCTACCGCGGATGGCTTTCCATGTGGTGCTCCTGTCGCTCCCTCCTCGGAAAGACGACACCTCCCCCATCGAGCCAGACTCCCTCGCCAATCCCGGCTCCAACTCCTCCAGCCACCACTTCTCCGTTGACCACATCTCCGAATTCGAAGTCGACGACTTCTCCGCCGACGATGACTGCGATTTGCCAAACACCTCGAACTACAGGTCCACCAGTAGCATCCGGGAGCTCGATCTCATCCCCTCCGATGCAGTGATTGACCTCCGCAACATCGCCGACCAGATGATCATCGAGATTGGAGAAGCTTCTGGGGACGCCTTACCGGAAGCCGAGATTGGCGTCTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

147

Amino Acids

16.3

Weight (kDa)

4.23

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 3 cut(s) 30, 47, 103
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 6 cut(s) 30, 82, 101, 103, 258, 358
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 2 cut(s) 408, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 2 cut(s) 322, 398
AluI AGCT 2 cut(s) 322, 398
Alw21I GWGCWC 2 cut(s) 126, 324
Aor13HI TCCGGA 1 cut(s) 62
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 4 cut(s) 228, 260, 284, 316
AspS9I GGNCC 2 cut(s) 60, 300
AsuC2I CCSGG 2 cut(s) 189, 317
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 2 cut(s) 60, 300
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 126, 324
BccI CCATC 2 cut(s) 100, 170
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 2 cut(s) 189, 317
BfmI CTRYAG 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 189, 317
Bme18I GGWCC 2 cut(s) 60, 300
BmgT120I GGNCC 2 cut(s) 60, 300
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 189, 317
BmsI GCATC 2 cut(s) 321, 331
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 240
BpuMI CCSGG 2 cut(s) 189, 317
BsaBI GATNNNNATC 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 408, 432
BsaJI CCNNGG 2 cut(s) 101, 140
BsaWI WCCGGW 2 cut(s) 62, 415
BsaXI ACNNNNNCTCC 8 cut(s) 140, 170, 200, 215, 230, 239, 245, 269
Bse1I ACTGG 2 cut(s) 44, 306
Bse8I GATNNNNATC 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 101, 140
BseGI GGATG 3 cut(s) 111, 312, 330
BseJI GATNNNNATC 1 cut(s) 380
BseNI ACTGG 2 cut(s) 44, 306
BseRI GAGGAG 2 cut(s) 129, 190
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 3 cut(s) 30, 47, 103
Bsh1285I CGRYCG 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 126, 324
BsiSI CCGG 4 cut(s) 63, 189, 316, 416
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 126, 324
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 25, 325, 378
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 6 cut(s) 30, 82, 101, 103, 258, 358
BspEI TCCGGA 1 cut(s) 62
BspFNI CGCG 3 cut(s) 30, 47, 103
BspLI GGNNCC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 240
BsrI ACTGG 2 cut(s) 44, 306
BssECI CCNNGG 2 cut(s) 101, 140
BssMI GATC 3 cut(s) 25, 325, 378
BssNI GRCGYC 2 cut(s) 408, 432
BstACI GRCGYC 2 cut(s) 408, 432
BstBI TTCGAA 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 111, 312, 330
BstFNI CGCG 3 cut(s) 30, 47, 103
BstKTI GATC 3 cut(s) 28, 328, 381
BstMBI GATC 3 cut(s) 25, 325, 378
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 187, 315
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 3 cut(s) 30, 47, 103
BtgI CCRYGG 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 3 cut(s) 111, 312, 330
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BtuMI TCGCGA 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 60, 300
Cfr42I CCGCGG 1 cut(s) 104
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 2 cut(s) 416, 421
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 1 cut(s) 116
CviJI RGCY 9 cut(s) 92, 97, 110, 169, 192, 207, 322, 398, 422
CviKI_1 RGCY 9 cut(s) 92, 97, 110, 169, 192, 207, 322, 398, 422
DpnI GATC 3 cut(s) 27, 327, 380
DpnII GATC 3 cut(s) 25, 325, 378
EciI GGCGGA 2 cut(s) 97, 247
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 60, 300
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 1 cut(s) 119
FaiI YATR 1 cut(s) 117
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 378
FblI GTMKAC 1 cut(s) 246
FokI GGATG 3 cut(s) 118, 299, 317
FriOI GRGCYC 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 187
HapII CCGG 4 cut(s) 63, 189, 316, 416
HgaI GACGC 2 cut(s) 416, 421
Hin1I GRCGYC 2 cut(s) 408, 432
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 2 cut(s) 223, 247
HindII GTYRAC 2 cut(s) 223, 247
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 5, 55, 85, 173
HpaII CCGG 4 cut(s) 63, 189, 316, 416
Hpy166II GTNNAC 3 cut(s) 223, 247, 303
Hpy188I TCNGA 4 cut(s) 10, 144, 235, 340
Hpy188III TCNNGA 3 cut(s) 46, 63, 385
Hpy8I GTNNAC 3 cut(s) 223, 247, 303
Hpy99I CGWCG 3 cut(s) 26, 251, 266
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
Hsp92I GRCGYC 2 cut(s) 408, 432
Hsp92II CATG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 378
KspI CCGCGG 1 cut(s) 104
Kzo9I GATC 3 cut(s) 25, 325, 378
LmnI GCTCC 4 cut(s) 129, 138, 197, 319
LweI GCATC 2 cut(s) 321, 331
MalI GATC 3 cut(s) 27, 327, 380
MboI GATC 3 cut(s) 25, 325, 378
MhlI GDGCHC 2 cut(s) 126, 324
MluCI AATT 1 cut(s) 236
MlyI GAGTC 2 cut(s) 79, 167
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 65, 147, 150, 166, 188, 211, 298, 346, 365
MroI TCCGGA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 4 cut(s) 63, 189, 316, 416
MspR9I CCNGG 2 cut(s) 189, 317
MvnI CGCG 3 cut(s) 30, 47, 103
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 2 cut(s) 189, 317
NdeII GATC 3 cut(s) 25, 325, 378
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 193
NruI TCGCGA 1 cut(s) 47
NspV TTCGAA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 270
PfeI GAWTC 2 cut(s) 5, 55
PfoI TCCNGGA 1 cut(s) 315
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 2 cut(s) 79, 167
PpsI GAGTC 2 cut(s) 79, 167
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 60, 300
PvuI CGATCG 1 cut(s) 28
RruI TCGCGA 1 cut(s) 47
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 324
SacII CCGCGG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 25, 325, 378
Sau96I GGNCC 2 cut(s) 60, 300
SchI GAGTC 2 cut(s) 79, 167
ScrFI CCNGG 2 cut(s) 189, 317
SduI GDGCHC 2 cut(s) 126, 324
SetI ASST 7 cut(s) 76, 158, 290, 302, 324, 357, 400
SfaNI GCATC 2 cut(s) 321, 331
SfcI CTRYAG 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 104
SinI GGWCC 2 cut(s) 60, 300
Sse9I AATT 1 cut(s) 236
SsiI CCGC 6 cut(s) 30, 82, 101, 103, 258, 358
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 187, 315
TaqI TCGA 7 cut(s) 21, 165, 240, 246, 290, 324, 384
TaqII GACCGA 1 cut(s) 48
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 5, 55
TscAI CASTG 1 cut(s) 351
TspGWI ACGGA 2 cut(s) 29, 208
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 2 cut(s) 60, 300
XapI RAATTY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.