RLG00000025526

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016986
Physical Location & Seq
Reverse (-)
46471994 .. 46473150
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025526

Sequence Viewer

Length: 567 bp
ATGAATAAAGCTAAGAGCTTTGACACAATCCACGATCAATTCACGTCAAATTCAACTGACTGCAGAATTGTAAATGGGGAAAGGGAAATAACCGAATGTAATTTGGGGAAATTATCTCGCCGCCAAAGAGGTCGCGATCGAAACGGGTTTCCGAATCGGGTCGATGTTTCTACGGACGCGAGGAGGGTGATGGAGAAAGCCCCTTTTGGGTTTAATCAGCGGAGAAAGACCAAATTAGTTCTGGCTCGTAAAGGCGGGAAAGACCCCGAGAGAGAAAAAGGCGGGAGACCGACATACTCCCTCGCCAATCCCGGCTCCTCCTCCTCCAGCCACCACTTCTCCTTTGACCACAGCTCCGAATTCGAAGTCGACGACTTCTCCGCCGACAATGACAGTGATTTGCCGAACACCTCGAACTACAGGTCCACCAGTAGCATCCGGGAGCTCGATCTCATCCTCTCCGATGCAGTGATTGACCTCCGCAACATCGCCGACCGGATGATCACCGAGATTGGAGAAGCTTCCGAGGACGCCTTGCCGGAAGCCGAGATTGGCTTCTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

5.48

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AccII CGCG 2 cut(s) 135, 179
AciI CCGC 6 cut(s) 121, 220, 255, 282, 381, 481
AcsI RAATTY 2 cut(s) 49, 359
AcyI GRCGYC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 1 cut(s) 54
AjiI CACGTC 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 5 cut(s) 11, 18, 354, 445, 521
AluI AGCT 5 cut(s) 11, 18, 354, 445, 521
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 266
ApoI RAATTY 2 cut(s) 49, 359
ArsI GACNNNNNNTTYG 4 cut(s) 351, 383, 407, 439
AspS9I GGNCC 1 cut(s) 423
AsuC2I CCSGG 2 cut(s) 312, 440
AsuHPI GGTGA 2 cut(s) 199, 496
AsuII TTCGAA 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 423
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BccI CCATC 1 cut(s) 184
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 2 cut(s) 312, 440
BcoDI GTCTC 1 cut(s) 280
BfmI CTRYAG 2 cut(s) 61, 418
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 312, 440
Bme18I GGWCC 1 cut(s) 423
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 312, 440
BmsI GCATC 2 cut(s) 444, 454
BpmI CTGGAG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 312, 440
BsaHI GRCGYC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 495
BsaXI ACNNNNNCTCC 6 cut(s) 323, 338, 353, 362, 368, 392
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 435, 453, 504
BseLI CCNNNNNNNGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 429
BseRI GAGGAG 4 cut(s) 196, 307, 310, 313
Bsh1236I CGCG 2 cut(s) 135, 179
Bsh1285I CGRYCG 2 cut(s) 139, 496
BsiEI CGRYCG 2 cut(s) 139, 496
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 4 cut(s) 312, 439, 496, 539
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 4 cut(s) 34, 136, 448, 501
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 6 cut(s) 121, 220, 255, 282, 381, 481
BspFNI CGCG 2 cut(s) 135, 179
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 4 cut(s) 34, 136, 448, 501
BssNI GRCGYC 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 435, 453, 504
BstFNI CGCG 2 cut(s) 135, 179
BstKTI GATC 4 cut(s) 37, 139, 451, 504
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 34, 136, 448, 501
BstMCI CGRYCG 2 cut(s) 139, 496
BstSCI CCNGG 2 cut(s) 310, 438
BstSFI CTRYAG 2 cut(s) 61, 418
BstUI CGCG 2 cut(s) 135, 179
BtgZI GCGATG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 3 cut(s) 435, 453, 504
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 400, 474
BtuMI TCGCGA 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 2 cut(s) 185, 539
DdeI CTNAG 1 cut(s) 12
DpnI GATC 4 cut(s) 36, 138, 450, 503
DpnII GATC 4 cut(s) 34, 136, 448, 501
EciI GGCGGA 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 447
FaiI YATR 1 cut(s) 295
FauI CCCGC 2 cut(s) 248, 275
FbaI TGATCA 1 cut(s) 501
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 3 cut(s) 422, 440, 511
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 4 cut(s) 312, 439, 496, 539
HgaI GACGC 2 cut(s) 185, 539
Hin1I GRCGYC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 1 cut(s) 154
HpaII CCGG 4 cut(s) 312, 439, 496, 539
HphI GGTGA 2 cut(s) 199, 496
Hpy166II GTNNAC 2 cut(s) 370, 426
Hpy188I TCNGA 4 cut(s) 153, 358, 463, 526
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 370, 426
Hpy99I CGWCG 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 63, 467
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 4 cut(s) 34, 136, 448, 501
LmnI GCTCC 3 cut(s) 320, 359, 442
LpnPI CCDG 8 cut(s) 227, 325, 340, 406, 442, 452, 509, 552
LweI GCATC 2 cut(s) 444, 454
MaeII ACGT 1 cut(s) 44
MalI GATC 4 cut(s) 36, 138, 450, 503
MboI GATC 4 cut(s) 34, 136, 448, 501
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 7 cut(s) 38, 49, 66, 100, 110, 233, 359
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 4 cut(s) 312, 439, 496, 539
MspR9I CCNGG 2 cut(s) 312, 440
MvnI CGCG 2 cut(s) 135, 179
NciI CCSGG 2 cut(s) 312, 440
NdeII GATC 4 cut(s) 34, 136, 448, 501
NlaIV GGNNCC 1 cut(s) 316
NruI TCGCGA 1 cut(s) 135
NspV TTCGAA 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 1 cut(s) 122
Ple19I CGATCG 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 423
PstI CTGCAG 1 cut(s) 65
PvuI CGATCG 1 cut(s) 139
RruI TCGCGA 1 cut(s) 135
SacI GAGCTC 1 cut(s) 447
SalI GTCGAC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 4 cut(s) 34, 136, 448, 501
Sau96I GGNCC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 312, 440
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 2 cut(s) 444, 454
SfcI CTRYAG 2 cut(s) 61, 418
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 1 cut(s) 423
Sse9I AATT 7 cut(s) 38, 49, 66, 100, 110, 233, 359
SsiI CCGC 6 cut(s) 121, 220, 255, 282, 381, 481
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 310, 438
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 47
TaqI TCGA 6 cut(s) 139, 162, 363, 369, 413, 447
TaqII GACCGA 1 cut(s) 304
TasI AATT 7 cut(s) 38, 49, 66, 100, 110, 233, 359
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 400, 474
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 400, 474
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 2 cut(s) 49, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.