RchiOBHm_Chr2g0155031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016990
Physical Location & Seq
Forward (+)
72059884 .. 72060455
572 bp
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UTR
Exon/CDS
Intron
PRQ52395

Sequence Viewer

Length: 474 bp
ATGAGGGGAAAGGTGCTTTTGTTGCATGGAGGAGGTCTAAAGAAACGATCGGCTCACTCTCTCACTCTCTGTCGCGGCCGAACCCAGAAAAGAAAAGAAAAACAGAGCAAGTGTTCTTCAAGCTTGTTCTTCCACCACAGGCCATCAAACGACACCGGACAACCTCCAGTAGATTCGCCTCAGCCTTGCGAAGCAACCTGTAGCAGTCTTGGGTCTCGGCTCAGCCGGGAACGGCGGCGAAGGGATAGAGTTCGTACGGCCCGATTTGGTTCCAAGAATGGTGACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCATCCACAGGTTCGCCTTGACCTTCTGAAGCTCCCAGAACCACCCTTTCACGGCGGCGCTGCCTCTGGAAGCGGCTGGAACTTGAACCCGGTTGCACCCGAAACCTTCGATCAGAAGGGATCGAGGCCTGAGGTTGCAGTTTTTACGTCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.44

Weight (kDa)

11.07

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 235, 372, 390
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 2 cut(s) 76, 296
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 120, 403
AluBI AGCT 3 cut(s) 123, 291, 349
AluI AGCT 3 cut(s) 123, 291, 349
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 445
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 5 cut(s) 76, 140, 258, 296, 443
ApeKI GCWGC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 227, 407
AsuHPI GGTGA 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 286
AxyI CCTNAGG 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 151
BceAI ACGGC 3 cut(s) 248, 273, 385
BcnI CCSGG 2 cut(s) 227, 407
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 378
BisI GCNGC 5 cut(s) 76, 236, 373, 378, 391
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 5 cut(s) 77, 237, 374, 379, 392
Bme1390I CCNGG 2 cut(s) 227, 407
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 227, 407
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 227, 407
BsaI GGTCTC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 167
Bse21I CCTNAGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 3 cut(s) 194, 235, 438
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 45
BseX3I CGGCCG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 50, 79
BshFI GGCC 5 cut(s) 78, 142, 260, 298, 445
BsiEI CGRYCG 2 cut(s) 50, 79
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 4 cut(s) 156, 226, 295, 407
BsiWI CGTACG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 5 cut(s) 78, 142, 260, 298, 445
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 3 cut(s) 47, 427, 437
Bsp1720I GCTNAGC 1 cut(s) 221
BspACI CCGC 4 cut(s) 75, 235, 372, 390
BspANI GGCC 5 cut(s) 78, 142, 260, 298, 445
BspCNI CTCAG 3 cut(s) 193, 234, 439
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 294
BssMI GATC 3 cut(s) 47, 427, 437
BstDEI CTNAG 3 cut(s) 180, 221, 447
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 3 cut(s) 50, 430, 440
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 3 cut(s) 47, 427, 437
BstMCI CGRYCG 2 cut(s) 50, 79
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 225, 405
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 5 cut(s) 78, 142, 260, 298, 445
BtsCI GGATG 1 cut(s) 319
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 26
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 180, 221, 447
DpnI GATC 3 cut(s) 49, 429, 439
DpnII GATC 3 cut(s) 47, 427, 437
EaeI YGGCCR 2 cut(s) 76, 296
EagI CGGCCG 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 286
FaeI CATG 1 cut(s) 29
FaiI YATR 1 cut(s) 27
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 76, 236, 373, 378, 391
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 76, 236, 373, 378, 391
FspBI CTAG 1 cut(s) 472
GlaI GCGC 1 cut(s) 376
GluI GCNGC 5 cut(s) 76, 236, 373, 378, 391
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 5 cut(s) 78, 142, 260, 298, 445
HapII CCGG 4 cut(s) 156, 226, 295, 407
HhaI GCGC 1 cut(s) 377
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 2 cut(s) 173, 284
HpaII CCGG 4 cut(s) 156, 226, 295, 407
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 345, 432
Hpy188III TCNNGA 1 cut(s) 384
Hpy99I CGWCG 1 cut(s) 469
HpyAV CCTTC 5 cut(s) 234, 317, 350, 427, 433
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 25, 413, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 180, 221, 447
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 3 cut(s) 47, 427, 437
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 1 cut(s) 364
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 49, 429, 439
MboI GATC 3 cut(s) 47, 427, 437
MboII GAAGA 2 cut(s) 108, 121
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 7 cut(s) 23, 26, 174, 189, 391, 435, 442
MspI CCGG 4 cut(s) 156, 226, 295, 407
MspR9I CCNGG 2 cut(s) 227, 407
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 2 cut(s) 227, 407
NdeII GATC 3 cut(s) 47, 427, 437
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 286
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PfeI GAWTC 1 cut(s) 173
Pfl23II CGTACG 1 cut(s) 254
PkrI GCNGC 5 cut(s) 77, 237, 374, 379, 392
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspLI CGTACG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 286
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 5 cut(s) 76, 236, 373, 378, 391
Sau3AI GATC 3 cut(s) 47, 427, 437
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 227, 407
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 4 cut(s) 75, 235, 372, 390
SspMI CTAG 1 cut(s) 472
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 225, 405
TaiI ACGT 1 cut(s) 467
TaqI TCGA 4 cut(s) 287, 426, 440, 467
TauI GCSGC 4 cut(s) 78, 238, 375, 393
TfiI GAWTC 1 cut(s) 173
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 286
XspI CTAG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.