RchiOBHm_Chr5g0021161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016990
Physical Location & Seq
Reverse (-)
15445879 .. 15448398
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30122

Sequence Viewer

Length: 288 bp
ATGACCCTAAAAAGGGCATATGCATGGTCACCATTGCCATTATCTCCGGTCCTTAAGAAAGGTTTACTTATACAATACCCCTGCTTTGCAGTCACCGGGACTAAGATTTATTACACCGTTGGAGAAACCCCTGCAGAGAATCCGGTTCCGAATGCCATGGTTTTGTGCTTTGATGTATCTGACCCGAATAAAGAGTGGAGACAAATTCCTGCATTGTTTTGGTTGAAACTATACCCTCCAGATGCTGAGTCCCCCTGCCCTTGTATCTCATATGATGGCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

7.6

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 12, 13
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 245
ApoI RAATTY 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 21, 85
AvaII GGWCC 1 cut(s) 49
BccI CCATC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 193
BfmI CTRYAG 1 cut(s) 132
BfrI CTTAAG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 2 cut(s) 46, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 13
Bse3DI GCAATG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 12, 13
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 47, 96, 143
BslFI GGGAC 2 cut(s) 112, 235
BslI CCNNNNNNNGG 2 cut(s) 12, 13
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 112, 235
BsmI GAATGC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 102, 246
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 193
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 2 cut(s) 24, 157
CviJI RGCY 1 cut(s) 283
CviKI_1 RGCY 1 cut(s) 283
DdeI CTNAG 2 cut(s) 102, 246
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 27, 160
FaiI YATR 8 cut(s) 19, 21, 25, 71, 158, 232, 271, 273
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 112, 235
FatI CATG 2 cut(s) 23, 156
FauNDI CATATG 2 cut(s) 19, 271
GsuI CTGGAG 1 cut(s) 222
HapII CCGG 3 cut(s) 47, 96, 143
Hin1II CATG 2 cut(s) 27, 160
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 139, 248
HpaII CCGG 3 cut(s) 47, 96, 143
HphI GGTGA 2 cut(s) 21, 85
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 150, 181
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 23, 89, 134, 212
HpyF3I CTNAG 2 cut(s) 102, 246
Hsp92II CATG 2 cut(s) 27, 160
LpnPI CCDG 8 cut(s) 60, 94, 109, 144, 156, 222, 252, 268
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 27, 91
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 22
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 3 cut(s) 47, 96, 143
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 2 cut(s) 19, 271
NlaIII CATG 2 cut(s) 27, 160
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 27, 91
NsiI ATGCAT 1 cut(s) 25
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 139
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspEI GGTNACC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 97
SetI ASST 2 cut(s) 64, 285
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 118
TasI AATT 1 cut(s) 204
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 2 cut(s) 27, 91
Tsp45I GTSAC 2 cut(s) 27, 91
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.