Rroxscaffold_7G00202860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016990
Physical Location & Seq
Reverse (-)
51296637 .. 51298732
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202860.1

Sequence Viewer

Length: 342 bp
ATGAACTTGGAGTCGGCGGAGAAGGCGAGGTCGGCGGTCGTGTTCCTCAAAGCTACTTGTGGCGGTCTTGGGTCACGGCACGCCGGGAACGGCGGCGAAGGGATCGAGTTCGTTCGGCCCCGATTTGGTTCCAAGTATGGTAACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCATCCACGGGTTCGCCTCGACCTTCGAAGCTCCCGAACCACCCTTGCACCGCGGCGCTGTCCCCGGAAGCGGCTAGAACTCAACCCCGAACCGATCGAAACGGAGCAAAGGATCCCGATATCTCGAGCTACGGGACTTCGTTTTGAGTGTTTCTTAGACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.78

Weight (kDa)

11.01

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 229
AciI CCGC 7 cut(s) 17, 35, 63, 93, 227, 229, 247
AclWI GGATC 3 cut(s) 110, 283, 296
AcoI YGGCCR 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 125, 246
AgeI ACCGGT 1 cut(s) 336
AluBI AGCT 4 cut(s) 53, 150, 207, 305
AluI AGCT 4 cut(s) 53, 150, 207, 305
AlwI GGATC 3 cut(s) 110, 283, 296
Ama87I CYCGRG 2 cut(s) 145, 300
AoxI GGCC 2 cut(s) 116, 155
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 85, 241
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 145, 300
BamHI GGATCC 1 cut(s) 288
BceAI ACGGC 2 cut(s) 92, 106
BcnI CCSGG 2 cut(s) 85, 241
BfaI CTAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 3 cut(s) 94, 230, 248
BlsI GCNGC 3 cut(s) 95, 231, 249
Bme1390I CCNGG 2 cut(s) 85, 241
BmeT110I CYCGRG 2 cut(s) 145, 300
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 3 cut(s) 119, 130, 290
BmrFI CCNGG 2 cut(s) 85, 241
Bpu14I TTCGAA 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 85, 241
BsaJI CCNNGG 3 cut(s) 182, 227, 239
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 246
Bse118I RCCGGY 2 cut(s) 153, 336
BseDI CCNNGG 3 cut(s) 182, 227, 239
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 125, 246
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 2 cut(s) 39, 273
BshFI GGCC 2 cut(s) 118, 157
BshTI ACCGGT 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 39, 273
BsiHKCI CYCGRG 2 cut(s) 145, 300
BsiSI CCGG 4 cut(s) 84, 154, 241, 337
BslFI GGGAC 2 cut(s) 222, 324
BslI CCNNNNNNNGG 2 cut(s) 125, 246
BsmFI GGGAC 2 cut(s) 222, 324
BsnI GGCC 2 cut(s) 118, 157
BsoBI CYCGRG 2 cut(s) 145, 300
Bsp119I TTCGAA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 102, 270, 288
BspACI CCGC 7 cut(s) 17, 35, 63, 93, 227, 229, 247
BspANI GGCC 2 cut(s) 118, 157
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 119, 130, 290
BspPI GGATC 3 cut(s) 110, 283, 296
BspT104I TTCGAA 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 153, 336
BssAI RCCGGY 2 cut(s) 153, 336
BssECI CCNNGG 3 cut(s) 182, 227, 239
BssMI GATC 3 cut(s) 102, 270, 288
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 2 cut(s) 182, 227
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 105, 273, 291
BstMBI GATC 3 cut(s) 102, 270, 288
BstMCI CGRYCG 2 cut(s) 39, 273
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstSCI CCNGG 2 cut(s) 83, 239
BstUI CGCG 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 2 cut(s) 118, 157
BtgI CCRYGG 2 cut(s) 182, 227
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 2 cut(s) 153, 336
Cfr13I GGNCC 1 cut(s) 117
Cfr42I CCGCGG 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 336
CviJI RGCY 7 cut(s) 53, 118, 150, 157, 207, 250, 305
CviKI_1 RGCY 7 cut(s) 53, 118, 150, 157, 207, 250, 305
DdeI CTNAG 1 cut(s) 331
DpnI GATC 3 cut(s) 104, 272, 290
DpnII GATC 3 cut(s) 102, 270, 288
EaeI YGGCCR 1 cut(s) 155
EciI GGCGGA 1 cut(s) 32
Eco32I GATATC 1 cut(s) 297
Eco88I CYCGRG 2 cut(s) 145, 300
EcoRV GATATC 1 cut(s) 297
FaiI YATR 1 cut(s) 138
FaqI GGGAC 2 cut(s) 222, 324
Fnu4HI GCNGC 3 cut(s) 94, 230, 248
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 94, 230, 248
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 233
GluI GCNGC 3 cut(s) 94, 230, 248
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 2 cut(s) 118, 157
HapII CCGG 4 cut(s) 84, 154, 241, 337
HhaI GCGC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 11
HpaII CCGG 4 cut(s) 84, 154, 241, 337
Hpy188III TCNNGA 3 cut(s) 210, 292, 300
HpyAV CCTTC 4 cut(s) 16, 92, 176, 209
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HpyF3I CTNAG 1 cut(s) 331
HspAI GCGC 1 cut(s) 232
KspI CCGCGG 1 cut(s) 230
Kzo9I GATC 3 cut(s) 102, 270, 288
LmnI GCTCC 2 cut(s) 212, 280
LpnPI CCDG 3 cut(s) 97, 167, 254
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 72, 140
MalI GATC 3 cut(s) 104, 272, 290
MboI GATC 3 cut(s) 102, 270, 288
MflI RGATCY 1 cut(s) 288
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 21, 56, 203
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 4 cut(s) 84, 154, 241, 337
MspR9I CCNGG 2 cut(s) 85, 241
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NciI CCSGG 2 cut(s) 85, 241
NdeII GATC 3 cut(s) 102, 270, 288
NlaIV GGNNCC 3 cut(s) 119, 130, 290
NmuCI GTSAC 1 cut(s) 72
NspV TTCGAA 1 cut(s) 202
PaeR7I CTCGAG 2 cut(s) 145, 300
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 3 cut(s) 95, 231, 249
Ple19I CGATCG 1 cut(s) 273
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 119, 130, 290
PspPI GGNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 145
PsuI RGATCY 1 cut(s) 288
PvuI CGATCG 1 cut(s) 273
SacII CCGCGG 1 cut(s) 230
SatI GCNGC 3 cut(s) 94, 230, 248
Sau3AI GATC 3 cut(s) 102, 270, 288
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 85, 241
SetI ASST 7 cut(s) 32, 55, 152, 168, 201, 209, 307
Sfr274I CTCGAG 2 cut(s) 145, 300
Sfr303I CCGCGG 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 230
SlaI CTCGAG 2 cut(s) 145, 300
SmlI CTYRAG 2 cut(s) 145, 300
SmoI CTYRAG 2 cut(s) 145, 300
SsiI CCGC 7 cut(s) 17, 35, 63, 93, 227, 229, 247
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 83, 239
TaqI TCGA 6 cut(s) 105, 146, 195, 202, 273, 301
TauI GCSGC 3 cut(s) 96, 232, 250
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 17, 167
TspGWI ACGGA 1 cut(s) 293
XhoI CTCGAG 2 cut(s) 145, 300
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.