Rroxscaffold_4G00289720
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016990
Physical Location & Seq
Reverse (-)
10286683 .. 10294602
7920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289720.1

Sequence Viewer

Length: 306 bp
ATGAATGATCAGGGCAACAGGATAACCCCATCTTATGTTGCATTCACTGATACTGAGAGCATAGTAGGCGATGCAGCATTTAACCAAATTCTGAGAAACCCTACCAACTCAATCTTTGCTGCAGAGGAGGCAGCCTTGCGCCGCATAACCACCGGAGACGACGGCGGAGGCCGAAAAACCCGTTTTAGATCCAAGCTTGATAACTCGAGCTACCGGCCACGAAACCTTCTCAAACTTCACCCACAGGAAGCTGTCAAGGGACAATTATGGAGATTATGTGATCCCTGTGGAAGCCACCAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

101

Amino Acids

11.26

Weight (kDa)

9.18

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 42 9.1e-10 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 165
AclWI GGATC 2 cut(s) 183, 275
AcoI YGGCCR 1 cut(s) 215
AcsI RAATTY 1 cut(s) 87
AdeI CACNNNGTG 1 cut(s) 301
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 196, 210, 251
AluI AGCT 3 cut(s) 196, 210, 251
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 183, 275
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 169, 215
ApeKI GCWGC 3 cut(s) 74, 119, 131
ApoI RAATTY 1 cut(s) 87
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 205
BbvI GCAGC 3 cut(s) 86, 106, 143
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 4 cut(s) 75, 120, 132, 142
BlsI GCNGC 4 cut(s) 76, 121, 133, 143
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse118I RCCGGY 1 cut(s) 213
BseBI CCWGG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 45, 83
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 86, 106, 143
BshFI GGCC 2 cut(s) 171, 217
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 153, 214
BslFI GGGAC 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 2 cut(s) 171, 217
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 3 cut(s) 7, 188, 280
BspACI CCGC 2 cut(s) 142, 165
BspANI GGCC 2 cut(s) 171, 217
BspCNI CTCAG 2 cut(s) 46, 84
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 183, 275
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssMI GATC 3 cut(s) 7, 188, 280
Bst2UI CCWGG 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 54, 92
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 3 cut(s) 10, 191, 283
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 7, 188, 280
BstMWI GCNNNNNNNGC 2 cut(s) 66, 128
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 86, 106, 143
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 2 cut(s) 171, 217
BtgZI GCGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 297
CviJI RGCY 7 cut(s) 134, 171, 196, 210, 217, 251, 294
CviKI_1 RGCY 7 cut(s) 134, 171, 196, 210, 217, 251, 294
DdeI CTNAG 2 cut(s) 54, 92
DpnI GATC 3 cut(s) 9, 190, 282
DpnII GATC 3 cut(s) 7, 188, 280
DraIII CACNNNGTG 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 215
EciI GGCGGA 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 150
FaiI YATR 5 cut(s) 36, 62, 146, 268, 277
FaqI GGGAC 1 cut(s) 273
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 75, 120, 132, 142
Fsp4HI GCNGC 4 cut(s) 75, 120, 132, 142
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 75, 120, 132, 142
HaeIII GGCC 2 cut(s) 171, 217
HapII CCGG 2 cut(s) 153, 214
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 2 cut(s) 153, 214
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 41, 74, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 128
HpyF3I CTNAG 2 cut(s) 54, 92
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 188, 280
LpnPI CCDG 6 cut(s) 4, 166, 227, 230, 284, 298
Lsp1109I GCAGC 3 cut(s) 86, 106, 143
LweI GCATC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 297
MalI GATC 3 cut(s) 9, 190, 282
MboI GATC 3 cut(s) 7, 188, 280
MflI RGATCY 1 cut(s) 188
MluCI AATT 2 cut(s) 87, 263
MnlI CCTC 3 cut(s) 118, 121, 161
MseI TTAA 1 cut(s) 81
MspI CCGG 2 cut(s) 153, 214
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 66, 128
NdeII GATC 3 cut(s) 7, 188, 280
PaeR7I CTCGAG 1 cut(s) 205
PctI GAATGC 1 cut(s) 41
PkrI GCNGC 4 cut(s) 76, 121, 133, 143
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspXI VCTCGAGB 1 cut(s) 205
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 188
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 4 cut(s) 75, 120, 132, 142
Sau3AI GATC 3 cut(s) 7, 188, 280
ScrFI CCNGG 1 cut(s) 299
SetI ASST 5 cut(s) 198, 212, 228, 253, 303
SexAI ACCWGGT 1 cut(s) 297
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 2 cut(s) 87, 263
SsiI CCGC 2 cut(s) 142, 165
StyD4I CCNGG 1 cut(s) 297
TaqI TCGA 1 cut(s) 206
TasI AATT 2 cut(s) 87, 263
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 52
TseI GCWGC 3 cut(s) 74, 119, 131
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 87
XhoI CTCGAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.