Rh5DG153700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016990
Physical Location & Seq
Reverse (-)
15627101 .. 15630759
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG153700.1

Sequence Viewer

Length: 1041 bp
ATGACCGATTATCCCACTCGCACGTCGTGTGGTATGTATGGATCCCAAATTTTCTTCAGCAGTGGCCGATATATTTATGTGTATGATACTGATACTAACCATGATGGTCCTGACTCTGCTGGTTTCACCAAGATGATTCCTGCTCTCCCAGAACGGAAAGTTAGCCCTCTGCTGGTGGAGCTCGCCGGGAAGCTCTACACCCTTGATTTCACTCCAGGTGTTGCTAAAAGTTTTGAGGTGTGTGACCCCAAAGAGGGCACATGGTCACCATTGCCACTACCTCCTATTTGGGTCCTTGGAGAAGGTGCACTTTTGCAATTACCCTGCTTTGCAGTCGACACCGGGACTAAGATTTATTACACCATTAGGGAAACCCCTGCCGAGGATGAGGATTCCGTTCCGAATACCATGGTTTTCTGCTTTGATGCATCCGACCCGAATAGAGAGTGGAGACAAATCCCTGCATTGTTTTGGTCGACACTCTCTCCAGGTGCTGCTGAGTCCCCCTGCCCTTGTATTCCATTTGATGGCACAGCTTTGATTATGGAACTGAATGTTGGGAATGATGATTTGAAATTAATGCTCACATATTCATATGGATCAGAAATGTTAATGGAAGCATATCTTCTCTCTTCCTCTGAAGAGAAAGCCAGGTTGATCAGCTCTATAAGTGAGGACATGATAAACATGCCACTTTTGCTTCCTGAATTTCAAAGACCAAGGAGTTACAAGTTGGTCGATCTTGGAGCCCAAAGAGCATGCCTAATTTTGAGCAGATTCGAGCGAACGGTTTCCATGCTAAGTTATCCTGACATGAACAATTTAGTGACTCTTGTTATACCCTTTAAGATTCATTGCAACACCGACTGTAGTGAGTTCAGATTCACCTTCTTCCCCACATGTTACCTCAAGAACAATGCAAAAACCGACCCCCGTACGTACTGTGATGTCTATGGTTGCTTTGTGCTACCTTCAAAATGGCAAGAGACACAACTTTCTGGTCTTAAGGATGAAACTCGGGGCTTGTTTGTTCATGCTTGA

Protein Analysis

346

Amino Acids

38.94

Weight (kDa)

4.73

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 2 cut(s) 336, 476
AclWI GGATC 3 cut(s) 36, 49, 607
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 2 cut(s) 48, 707
AcuI CTGAAG 2 cut(s) 40, 660
AdeI CACNNNGTG 1 cut(s) 27
AfaI GTAC 2 cut(s) 937, 941
AfiI CCNNNNNNNGG 5 cut(s) 172, 253, 254, 382, 527
AflII CTTAAG 1 cut(s) 1004
AflIII ACRYGT 1 cut(s) 899
AgsI TTSAA 3 cut(s) 574, 713, 975
AjiI CACGTC 1 cut(s) 24
AjnI CCWGG 3 cut(s) 214, 487, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 4 cut(s) 181, 193, 536, 663
AluI AGCT 4 cut(s) 181, 193, 536, 663
Alw21I GWGCWC 2 cut(s) 183, 310
Alw26I GTCTC 2 cut(s) 445, 980
Alw44I GTGCAC 1 cut(s) 306
AlwI GGATC 3 cut(s) 36, 49, 607
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 1 cut(s) 64
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 48, 707
AseI ATTAAT 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 107, 292
AsuC2I CCSGG 2 cut(s) 187, 343
AsuHPI GGTGA 3 cut(s) 118, 258, 877
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 107, 292
BaeGI GKGCMC 2 cut(s) 260, 310
BamHI GGATCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 183, 751
Bbv12I GWGCWC 2 cut(s) 183, 310
BbvI GCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 98, 521
BciT130I CCWGG 3 cut(s) 216, 489, 652
BclI TGATCA 1 cut(s) 657
BcnI CCSGG 2 cut(s) 187, 343
BcoDI GTCTC 2 cut(s) 445, 980
BfmI CTRYAG 1 cut(s) 868
BfrI CTTAAG 1 cut(s) 1004
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 5 cut(s) 187, 216, 343, 489, 652
Bme18I GGWCC 2 cut(s) 107, 292
BmeT110I CYCGRG 1 cut(s) 1017
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 107, 292
BmiI GGNNCC 3 cut(s) 43, 293, 748
BmrFI CCNGG 5 cut(s) 187, 216, 343, 489, 652
BmsI GCATC 2 cut(s) 415, 437
BpmI CTGGAG 2 cut(s) 198, 471
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 2 cut(s) 187, 343
BsaAI YACGTR 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 295, 381, 408, 719
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 253, 254, 382, 527
Bse3DI GCAATG 2 cut(s) 269, 853
BseBI CCWGG 3 cut(s) 216, 489, 652
BseDI CCNNGG 4 cut(s) 295, 381, 408, 719
BseGI GGATG 3 cut(s) 391, 428, 1015
BseLI CCNNNNNNNGG 5 cut(s) 172, 253, 254, 382, 527
BseMI GCAATG 2 cut(s) 269, 853
BseMII CTCAG 1 cut(s) 489
BseSI GKGCMC 2 cut(s) 260, 310
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 183, 310
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 186, 342
BsiWI CGTACG 1 cut(s) 935
BslFI GGGAC 2 cut(s) 358, 487
BslI CCNNNNNNNGG 5 cut(s) 172, 253, 254, 382, 527
BsmAI GTCTC 2 cut(s) 445, 980
BsmFI GGGAC 2 cut(s) 358, 487
BsnI GGCC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 1017
Bsp1286I GDGCHC 4 cut(s) 183, 260, 310, 751
Bsp143I GATC 4 cut(s) 41, 599, 657, 739
Bsp19I CCATGG 1 cut(s) 408
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 43, 293, 748
BspPI GGATC 3 cut(s) 36, 49, 607
BspTI CTTAAG 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 269, 853
BssECI CCNNGG 4 cut(s) 295, 381, 408, 719
BssMI GATC 4 cut(s) 41, 599, 657, 739
BssT1I CCWWGG 3 cut(s) 295, 408, 719
Bst2UI CCWGG 3 cut(s) 216, 489, 652
Bst4CI ACNGT 3 cut(s) 790, 869, 944
Bst6I CTCTTC 2 cut(s) 636, 637
BstAFI CTTAAG 1 cut(s) 1004
BstBAI YACGTR 1 cut(s) 939
BstC8I GCNNGC 2 cut(s) 183, 760
BstDEI CTNAG 3 cut(s) 348, 498, 800
BstDSI CCRYGG 1 cut(s) 408
BstEII GGTNACC 1 cut(s) 264
BstF5I GGATG 3 cut(s) 391, 428, 1015
BstKTI GATC 4 cut(s) 44, 602, 660, 742
BstMAI GTCTC 2 cut(s) 445, 980
BstMBI GATC 4 cut(s) 41, 599, 657, 739
BstMWI GCNNNNNNNGC 3 cut(s) 178, 697, 755
BstNI CCWGG 3 cut(s) 216, 489, 652
BstNSI RCATGY 3 cut(s) 691, 762, 903
BstPI GGTNACC 1 cut(s) 264
BstSCI CCNGG 5 cut(s) 185, 214, 341, 487, 650
BstSFI CTRYAG 1 cut(s) 868
BstSLI GKGCMC 2 cut(s) 260, 310
BstSNI TACGTA 1 cut(s) 939
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 3 cut(s) 391, 428, 1015
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 183, 760
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 2 cut(s) 107, 292
Csp6I GTAC 2 cut(s) 936, 940
CviJI RGCY 9 cut(s) 66, 165, 181, 193, 536, 650, 663, 749, 1023
CviKI_1 RGCY 9 cut(s) 66, 165, 181, 193, 536, 650, 663, 749, 1023
CviQI GTAC 2 cut(s) 936, 940
DdeI CTNAG 3 cut(s) 348, 498, 800
DpnI GATC 4 cut(s) 43, 601, 659, 741
DpnII GATC 4 cut(s) 41, 599, 657, 739
DraIII CACNNNGTG 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 636, 637
EarI CTCTTC 2 cut(s) 636, 637
Ecl136II GAGCTC 1 cut(s) 181
Eco105I TACGTA 1 cut(s) 939
Eco130I CCWWGG 3 cut(s) 295, 408, 719
Eco24I GRGCYC 2 cut(s) 183, 751
Eco47I GGWCC 2 cut(s) 107, 292
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 40, 660
Eco88I CYCGRG 1 cut(s) 1017
Eco91I GGTNACC 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 214, 487, 650
EcoT14I CCWWGG 3 cut(s) 295, 408, 719
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 183, 751
ErhI CCWWGG 3 cut(s) 295, 408, 719
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 609, 641
FaqI GGGAC 2 cut(s) 358, 487
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 657
FblI GTMKAC 2 cut(s) 336, 476
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 3 cut(s) 398, 415, 1022
FriOI GRGCYC 2 cut(s) 183, 751
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 2 cut(s) 198, 471
HaeIII GGCC 1 cut(s) 66
HapII CCGG 2 cut(s) 186, 342
HincII GTYRAC 2 cut(s) 337, 477
HindII GTYRAC 2 cut(s) 337, 477
HinfI GANTC 8 cut(s) 113, 136, 392, 500, 777, 829, 850, 882
HpaII CCGG 2 cut(s) 186, 342
HphI GGTGA 3 cut(s) 118, 258, 877
Hpy166II GTNNAC 3 cut(s) 308, 337, 477
Hpy188I TCNGA 5 cut(s) 402, 433, 604, 640, 881
Hpy188III TCNNGA 4 cut(s) 110, 704, 809, 910
Hpy8I GTNNAC 3 cut(s) 308, 337, 477
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 296, 898, 981
HpyCH4III ACNGT 3 cut(s) 790, 869, 944
HpyCH4IV ACGT 2 cut(s) 23, 938
HpyCH4V TGCA 7 cut(s) 308, 316, 332, 428, 464, 858, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 697, 755
HpyF3I CTNAG 3 cut(s) 348, 498, 800
HpySE526I ACGT 2 cut(s) 23, 938
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 4 cut(s) 41, 599, 657, 739
LmnI GCTCC 2 cut(s) 178, 746
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 415, 437
MaeII ACGT 2 cut(s) 23, 938
MaeIII GTNAC 5 cut(s) 242, 264, 725, 826, 902
MalI GATC 4 cut(s) 43, 601, 659, 741
MboI GATC 4 cut(s) 41, 599, 657, 739
MboII GAAGA 5 cut(s) 46, 617, 624, 653, 883
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 4 cut(s) 183, 260, 310, 751
MluCI AATT 6 cut(s) 48, 317, 575, 707, 765, 820
MlyI GAGTC 3 cut(s) 107, 509, 823
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 9 cut(s) 177, 229, 247, 291, 376, 382, 646, 667, 917
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 4 cut(s) 578, 611, 846, 1005
MslI CAYNNNNRTG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 1004
MspI CCGG 2 cut(s) 186, 342
MspR9I CCNGG 5 cut(s) 187, 216, 343, 489, 652
MvaI CCWGG 3 cut(s) 216, 489, 652
MwoI GCNNNNNNNGC 3 cut(s) 178, 697, 755
NciI CCSGG 2 cut(s) 187, 343
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 595
NdeII GATC 4 cut(s) 41, 599, 657, 739
NlaIV GGNNCC 3 cut(s) 43, 293, 748
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 242, 264, 826
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 691, 762, 903
PaeI GCATGC 1 cut(s) 762
PciI ACATGT 1 cut(s) 899
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 5 cut(s) 136, 392, 777, 850, 882
Pfl23II CGTACG 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 3 cut(s) 107, 508, 823
PpsI GAGTC 3 cut(s) 107, 508, 823
Ppu21I YACGTR 1 cut(s) 939
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 899
PshBI ATTAAT 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 214, 487, 650
PspEI GGTNACC 1 cut(s) 264
PspGI CCWGG 3 cut(s) 214, 487, 650
PspLI CGTACG 1 cut(s) 935
PspN4I GGNNCC 3 cut(s) 43, 293, 748
PspPI GGNCC 2 cut(s) 107, 292
PspPPI RGGWCCY 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 2 cut(s) 937, 941
RsaNI GTAC 2 cut(s) 936, 940
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 2 cut(s) 335, 475
SaqAI TTAA 4 cut(s) 578, 611, 846, 1005
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 4 cut(s) 41, 599, 657, 739
Sau96I GGNCC 2 cut(s) 107, 292
SchI GAGTC 3 cut(s) 107, 509, 823
ScrFI CCNGG 5 cut(s) 187, 216, 343, 489, 652
SduI GDGCHC 4 cut(s) 183, 260, 310, 751
SfaNI GCATC 2 cut(s) 415, 437
SfcI CTRYAG 1 cut(s) 868
SinI GGWCC 2 cut(s) 107, 292
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 908, 1004
SmoI CTYRAG 2 cut(s) 908, 1004
SnaBI TACGTA 1 cut(s) 939
SphI GCATGC 1 cut(s) 762
Sse9I AATT 6 cut(s) 48, 317, 575, 707, 765, 820
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 185, 214, 341, 487, 650
StyI CCWWGG 3 cut(s) 295, 408, 719
TaaI ACNGT 3 cut(s) 790, 869, 944
TaiI ACGT 2 cut(s) 26, 941
TaqI TCGA 4 cut(s) 336, 476, 738, 780
TaqII GACCGA 1 cut(s) 20
TasI AATT 6 cut(s) 48, 317, 575, 707, 765, 820
TfiI GAWTC 5 cut(s) 136, 392, 777, 850, 882
Tru1I TTAA 4 cut(s) 578, 611, 846, 1005
Tru9I TTAA 4 cut(s) 578, 611, 846, 1005
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 3 cut(s) 242, 264, 826
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 3 cut(s) 242, 264, 826
TspDTI ATGAA 5 cut(s) 582, 830, 842, 1022, 1026
TspGWI ACGGA 2 cut(s) 169, 385
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 1004
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 107, 292
VspI ATTAAT 1 cut(s) 578
XapI RAATTY 2 cut(s) 48, 707
XceI RCATGY 3 cut(s) 691, 762, 903
XmiI GTMKAC 2 cut(s) 336, 476
XmnI GAANNNNTTC 1 cut(s) 790
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.