Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016990

Physical Location & Seq

Genomic Coordinates Forward (+)

16783210 .. 16794257

Gene Structure 11048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGGCTACTTGGACCCCGAATACTACCAATCACGTCGTTTACGGAAAAAAGTGACGTCTATAGTTTTGGAGTAGTTCTTGCCGAGCTCTTGACTGGACAAAAACCAATTTCAAAAAAGAAAAGGTCACAATTAGAAGAGTACAAAAGTATTGTTTGGCTCCAAAACCAGTTGGCTTGCAAACGGTCTCTTTTGAGAGTGTGCGCAGGCGTGCCATCACCGTGGGGTGCAGTCGTCGGGGACTTCGCCTCGGCCTTGCGCACCTCCCCTACGGCCGCCTTGCACCGTCTCCGCCGTAGCCGCCGCGGCAAGAGCATCGCTCTCACTTCTCTCTCTCACTCCACCGGCCACCGTGCACTACCAAATCACCTCCCACACCTTCAAGTCGATCGTACGCAGCTGCAGGAGGCAGCCTTGCGCTGCGTAACCACCGGAGACGATGGCGGAGGCCGAAAAACCCGTTTTAGTTCCAAACGTGATAACTCGAGCTACCGGCCACGAAACCTTCCCAAACTTCACCCACAGGTTCGCCTTGACCTTTCGAAGCTCCCGAACCACCTTTTGCACGGCGGCGCCGCCTCCGGAAGGGGCCGGAACTCGAACCCGATTGCACCCGAAACCTTCGAACAGTATATCTCGAGTTGTAGAGCTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

219

Amino Acids

24.31

Weight (kDa)

10.92

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 48	1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155031 RchiOBHm_Chr5g0021161
rosa_laevigata	RLG00000032586
rosa_multiflora	Rmu_ssc0000244.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057350 Rroxscaffold_1G00057360 Rroxscaffold_2G00095430 Rroxscaffold_2G00136940 Rroxscaffold_4G00289720 Rroxscaffold_4G00290680 Rroxscaffold_4G00306250 Rroxscaffold_7G00202860
rosa_samantha	Rh5DG153700
rosa_wichuraiana	Rw6G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
Acc16I	TGCGCA	2 cut(s)	205, 260
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	9 cut(s)	4, 276, 292, 301, 304, 306, 444, 570, 576
AcoI	YGGCCR	3 cut(s)	273, 346, 494
AcyI	GRCGYC	2 cut(s)	57, 573
AfaI	GTAC	2 cut(s)	143, 394
AfiI	CCNNNNNNNGG	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	114, 383
AjiI	CACGTC	1 cut(s)	36
AluBI	AGCT	5 cut(s)	88, 400, 489, 547, 650
AluI	AGCT	5 cut(s)	88, 400, 489, 547, 650
Alw21I	GWGCWC	2 cut(s)	90, 358
Alw26I	GTCTC	3 cut(s)	192, 293, 429
Alw44I	GTGCAC	1 cut(s)	354
Ama87I	CYCGRG	2 cut(s)	484, 637
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	6 cut(s)	252, 273, 346, 448, 494, 589
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	4 cut(s)	397, 400, 410, 420
AspLEI	GCGC	4 cut(s)	206, 261, 420, 575
AspS9I	GGNCC	2 cut(s)	14, 589
AsuHPI	GGTGA	3 cut(s)	210, 359, 509
AsuII	TTCGAA	2 cut(s)	542, 624
AvaI	CYCGRG	2 cut(s)	484, 637
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	90, 358
BbvI	GCAGC	4 cut(s)	387, 407, 409, 422
BccI	CCATC	2 cut(s)	223, 434
BceAI	ACGGC	3 cut(s)	279, 288, 583
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BcoDI	GTCTC	3 cut(s)	192, 293, 429
BfmI	CTRYAG	2 cut(s)	61, 401
BfoI	RGCGCY	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	2 cut(s)	484, 637
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	14, 589
BmiI	GGNNCC	4 cut(s)	16, 161, 574, 590
BmsI	GCATC	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
Bpu14I	TTCGAA	2 cut(s)	542, 624
BsaHI	GRCGYC	2 cut(s)	57, 573
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	221, 249, 304
BsaWI	WCCGGW	2 cut(s)	431, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse118I	RCCGGY	2 cut(s)	344, 492
Bse1I	ACTGG	2 cut(s)	100, 169
BseAI	TCCGGA	1 cut(s)	581
BseDI	CCNNGG	3 cut(s)	221, 249, 304
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	100, 169
BseSI	GKGCMC	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	4 cut(s)	387, 407, 409, 422
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	2 cut(s)	276, 391
BshFI	GGCC	6 cut(s)	254, 275, 348, 450, 496, 591
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	2 cut(s)	276, 391
BsiHKAI	GWGCWC	2 cut(s)	90, 358
BsiHKCI	CYCGRG	2 cut(s)	484, 637
BsiSI	CCGG	5 cut(s)	345, 432, 493, 582, 592
BsiWI	CGTACG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmAI	GTCTC	3 cut(s)	192, 293, 429
BsmBI	CGTCTC	2 cut(s)	293, 429
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	6 cut(s)	254, 275, 348, 450, 496, 591
Bso31I	GGTCTC	1 cut(s)	192
BsoBI	CYCGRG	2 cut(s)	484, 637
Bsp119I	TTCGAA	2 cut(s)	542, 624
Bsp1286I	GDGCHC	2 cut(s)	90, 358
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	9 cut(s)	4, 276, 292, 301, 304, 306, 444, 570, 576
BspANI	GGCC	6 cut(s)	254, 275, 348, 450, 496, 591
BspEI	TCCGGA	1 cut(s)	581
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	16, 161, 574, 590
BspMAI	CTGCAG	1 cut(s)	405
BspT104I	TTCGAA	2 cut(s)	542, 624
BspT107I	GGYRCC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	2 cut(s)	344, 492
BsrI	ACTGG	2 cut(s)	100, 169
BssAI	RCCGGY	2 cut(s)	344, 492
BssECI	CCNNGG	3 cut(s)	221, 249, 304
BssMI	GATC	1 cut(s)	388
BssNI	GRCGYC	2 cut(s)	57, 573
Bst4CI	ACNGT	5 cut(s)	186, 222, 287, 353, 630
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	57, 573
BstBI	TTCGAA	2 cut(s)	542, 624
BstC8I	GCNNGC	3 cut(s)	178, 208, 212
BstDSI	CCRYGG	2 cut(s)	221, 304
BstENI	CCTNNNNNAGG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	4 cut(s)	206, 261, 420, 575
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	3 cut(s)	192, 293, 429
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	2 cut(s)	276, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 306, 312
BstSFI	CTRYAG	2 cut(s)	61, 401
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	387, 407, 409, 422
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	6 cut(s)	254, 275, 348, 450, 496, 591
BtgI	CCRYGG	2 cut(s)	221, 304
BtgZI	GCGATG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	178, 208, 212
CfoI	GCGC	4 cut(s)	206, 261, 420, 575
Cfr10I	RCCGGY	2 cut(s)	344, 492
Cfr13I	GGNCC	2 cut(s)	14, 589
Cfr42I	CCGCGG	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	142, 393
CviQI	GTAC	2 cut(s)	142, 393
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	3 cut(s)	273, 346, 494
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	2 cut(s)	281, 459
Ecl136II	GAGCTC	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	2 cut(s)	484, 637
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
Esp3I	CGTCTC	2 cut(s)	293, 429
FaiI	YATR	2 cut(s)	63, 633
FaqI	GGGAC	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	90
FspI	TGCGCA	2 cut(s)	205, 260
GlaI	GCGC	4 cut(s)	205, 260, 419, 574
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	6 cut(s)	254, 275, 348, 450, 496, 591
HapII	CCGG	5 cut(s)	345, 432, 493, 582, 592
HhaI	GCGC	4 cut(s)	206, 261, 420, 575
Hin1I	GRCGYC	2 cut(s)	57, 573
Hin6I	GCGC	4 cut(s)	204, 259, 418, 573
HinP1I	GCGC	4 cut(s)	204, 259, 418, 573
HpaII	CCGG	5 cut(s)	345, 432, 493, 582, 592
HphI	GGTGA	3 cut(s)	210, 359, 509
Hpy166II	GTNNAC	2 cut(s)	42, 356
Hpy188III	TCNNGA	4 cut(s)	91, 550, 582, 637
Hpy8I	GTNNAC	2 cut(s)	42, 356
Hpy99I	CGWCG	2 cut(s)	40, 239
HpyAV	CCTTC	4 cut(s)	389, 515, 579, 631
HpyCH4III	ACNGT	5 cut(s)	186, 222, 287, 353, 630
HpyCH4IV	ACGT	3 cut(s)	35, 57, 475
HpyCH4V	TGCA	7 cut(s)	180, 230, 283, 356, 403, 565, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 306, 312
HpySE526I	ACGT	3 cut(s)	35, 57, 475
Hsp92I	GRCGYC	2 cut(s)	57, 573
HspAI	GCGC	4 cut(s)	204, 259, 418, 573
KasI	GGCGCC	1 cut(s)	572
Kpn2I	TCCGGA	1 cut(s)	581
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	165, 552
Lsp1109I	GCAGC	4 cut(s)	387, 407, 409, 422
LweI	GCATC	1 cut(s)	324
MaeII	ACGT	3 cut(s)	35, 57, 475
MaeIII	GTNAC	3 cut(s)	53, 126, 424
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	90, 358
MluCI	AATT	2 cut(s)	108, 131
Mly113I	GGCGCC	1 cut(s)	573
MnlI	CCTC	6 cut(s)	259, 274, 380, 400, 440, 589
MroI	TCCGGA	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	2 cut(s)	306, 400
MspI	CCGG	5 cut(s)	345, 432, 493, 582, 592
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	300, 306, 312
NarI	GGCGCC	1 cut(s)	573
NdeII	GATC	1 cut(s)	388
NlaIV	GGNNCC	4 cut(s)	16, 161, 574, 590
NmeAIII	GCCGAG	2 cut(s)	109, 230
NmuCI	GTSAC	2 cut(s)	53, 126
NsbI	TGCGCA	2 cut(s)	205, 260
NspV	TTCGAA	2 cut(s)	542, 624
PaeR7I	CTCGAG	2 cut(s)	484, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
Pfl23II	CGTACG	1 cut(s)	392
Ple19I	CGATCG	1 cut(s)	391
PluTI	GGCGCC	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	90
PspLI	CGTACG	1 cut(s)	392
PspN4I	GGNNCC	4 cut(s)	16, 161, 574, 590
PspPI	GGNCC	2 cut(s)	14, 589
PspXI	VCTCGAGB	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	405
PvuI	CGATCG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	143, 394
RsaNI	GTAC	2 cut(s)	142, 393
RseI	CAYNNNNRTG	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	307
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	14, 589
SduI	GDGCHC	2 cut(s)	90, 358
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	2 cut(s)	61, 401
SfoI	GGCGCC	1 cut(s)	574
Sfr274I	CTCGAG	2 cut(s)	484, 637
Sfr303I	CCGCGG	1 cut(s)	307
SfuI	TTCGAA	2 cut(s)	542, 624
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	2 cut(s)	484, 637
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	484, 637
SmoI	CTYRAG	2 cut(s)	484, 637
Sse9I	AATT	2 cut(s)	108, 131
SsiI	CCGC	9 cut(s)	4, 276, 292, 301, 304, 306, 444, 570, 576
SspDI	GGCGCC	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	5 cut(s)	186, 222, 287, 353, 630
TaiI	ACGT	3 cut(s)	38, 60, 478
TaqI	TCGA	6 cut(s)	387, 485, 542, 599, 624, 638
TasI	AATT	2 cut(s)	108, 131
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	7 cut(s)	7, 278, 303, 306, 309, 573, 578
TseFI	GTSAC	2 cut(s)	53, 126
TseI	GCWGC	4 cut(s)	397, 400, 410, 420
Tsp45I	GTSAC	2 cut(s)	53, 126
TspGWI	ACGGA	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	583
XhoI	CTCGAG	2 cut(s)	484, 637
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.