Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016990

Physical Location & Seq

Genomic Coordinates Forward (+)

79325794 .. 79326789

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTTCCTCTGGTGGTTCTGCATCATCTAACCCGAAGGAGGAGGGGGACTTGCCTGGTACAGAGCCAATTGCTGCAGTAACCCGGTGGGAGAGACCCGCCGTGATTATCGATAGGGACTTTACATATGTGCAGCTAGAAGCGGAGGAGATTGATCGCTCCAAGGCCCTTTATATATGTAACTGGGAAGCTAGCATGACAACCGAAGGGATGTTGGCCGAGCGTCACACTATCAATACCATCAACCTGTCCGATTTGTTCTCAGAATCCTCCAGTCAGTATTCTCCCCTTCCATTACGCCAAGTGTCTTGTCAGGAGGTGACCGAAGATTGCCCCAATTTCACGTCGTGTGGTGTGTATGGATCCCAAATTTTCTTCAGCGGCGGCCCAGATATTTATGTGTATGATACTGATACTAACCATGATGGTCCTGACTCTGTTGGTTTCACCAAGATGAGTCCTGGTTTCCTACAACCGAAATTTAAGCCGCTGCTGGTGGAGCTCGCGGAGAAACTCTACGCCCTTGATCCCACTCCAGCTGCTCAAAGTTTTGAGGTGTATGACCCCAAAGAAGGCATATATGCTCACCATTACCACTACCTCCTATTTCGGTCCTTGGAGAAGGTGCACTTCGGCTATTACCCTCCTTTGCAGTCACTGGGACTAGGATTTATTACACCATTAGAGAAACACCTACCGACAATCCCGTTCCGAATACCATGGTTTTGTGCTTTGATGTATCCGACCCGAATAGAGAGTGGAGACAAATCCCTGCATTGTTTTGGTCGACACTCTCTCCAGATGCTGCTGAGTCCCCTGCCCTGGTATTCCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.37

Weight (kDa)

5.0

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155031 RchiOBHm_Chr5g0021161
rosa_laevigata	RLG00000032586
rosa_multiflora	Rmu_ssc0000244.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057350 Rroxscaffold_1G00057360 Rroxscaffold_2G00095430 Rroxscaffold_2G00136940 Rroxscaffold_4G00289720 Rroxscaffold_4G00290680 Rroxscaffold_4G00306250 Rroxscaffold_7G00202860
rosa_samantha	Rh5DG153700
rosa_wichuraiana	Rw6G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	1 cut(s)	506
AciI	CCGC	6 cut(s)	99, 143, 381, 384, 488, 506
AclWI	GGATC	3 cut(s)	357, 370, 521
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	369, 479
AcuI	CTGAAG	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	40, 572, 822
AjiI	CACGTC	1 cut(s)	345
AjnI	CCWGG	3 cut(s)	55, 460, 821
AluBI	AGCT	4 cut(s)	136, 191, 502, 539
AluI	AGCT	4 cut(s)	136, 191, 502, 539
Alw21I	GWGCWC	2 cut(s)	504, 630
Alw26I	GTCTC	2 cut(s)	88, 756
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	357, 370, 521
AlwNI	CAGNNNCTG	2 cut(s)	658, 805
AoxI	GGCC	3 cut(s)	165, 216, 385
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	5 cut(s)	74, 133, 490, 539, 805
ApoI	RAATTY	2 cut(s)	369, 479
AspS9I	GGNCC	4 cut(s)	166, 386, 428, 612
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	331, 439, 578
AsuNHI	GCTAGC	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	428, 612
BaeGI	GKGCMC	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	504, 630
BbvI	GCAGC	5 cut(s)	61, 145, 477, 526, 792
BccI	CCATC	2 cut(s)	248, 419
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	3 cut(s)	57, 462, 823
BciVI	GTATCC	1 cut(s)	750
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	88, 756
BfaI	CTAG	3 cut(s)	137, 192, 665
BfmI	CTRYAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	750
BisI	GCNGC	8 cut(s)	75, 134, 382, 385, 488, 491, 540, 806
BlsI	GCNGC	8 cut(s)	76, 135, 383, 386, 489, 492, 541, 807
Bme1390I	CCNGG	4 cut(s)	57, 85, 462, 823
Bme18I	GGWCC	2 cut(s)	428, 612
BmgBI	CACGTC	1 cut(s)	345
BmgT120I	GGNCC	4 cut(s)	166, 386, 428, 612
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	4 cut(s)	57, 85, 462, 823
BmrI	ACTGGG	2 cut(s)	193, 668
BmsI	GCATC	2 cut(s)	32, 792
BmtI	GCTAGC	1 cut(s)	195
BmuI	ACTGGG	2 cut(s)	193, 668
BpmI	CTGGAG	3 cut(s)	256, 519, 782
BpuMI	CCSGG	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	4 cut(s)	162, 615, 719, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 572, 822
Bse1I	ACTGG	3 cut(s)	188, 273, 663
BseBI	CCWGG	3 cut(s)	57, 462, 823
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	162, 615, 719, 821
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	40, 572, 822
BseMII	CTCAG	2 cut(s)	276, 800
BseNI	ACTGG	3 cut(s)	188, 273, 663
BseRI	GAGGAG	2 cut(s)	56, 161
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	5 cut(s)	61, 145, 477, 526, 792
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	3 cut(s)	167, 218, 387
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	504, 630
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	4 cut(s)	62, 131, 675, 798
BslI	CCNNNNNNNGG	3 cut(s)	40, 572, 822
BsmAI	GTCTC	2 cut(s)	88, 756
BsmFI	GGGAC	4 cut(s)	62, 131, 675, 798
BsnI	GGCC	3 cut(s)	167, 218, 387
Bso31I	GGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	504, 630
Bsp143I	GATC	3 cut(s)	154, 362, 526
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	6 cut(s)	99, 143, 381, 384, 488, 506
BspANI	GGCC	3 cut(s)	167, 218, 387
BspCNI	CTCAG	2 cut(s)	275, 801
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	836
BspLI	GGNNCC	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	357, 370, 521
BspTNI	GGTCTC	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	188, 273, 663
BssECI	CCNNGG	4 cut(s)	162, 615, 719, 821
BssMI	GATC	3 cut(s)	154, 362, 526
BssT1I	CCWWGG	3 cut(s)	162, 615, 719
Bst2UI	CCWGG	3 cut(s)	57, 462, 823
BstC8I	GCNNGC	2 cut(s)	193, 504
BstDEI	CTNAG	2 cut(s)	262, 809
BstDSI	CCRYGG	1 cut(s)	719
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	506
BstKTI	GATC	3 cut(s)	157, 365, 529
BstMAI	GTCTC	2 cut(s)	88, 756
BstMBI	GATC	3 cut(s)	154, 362, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	3 cut(s)	57, 462, 823
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	4 cut(s)	55, 83, 460, 821
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	5 cut(s)	61, 145, 477, 526, 792
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	167, 218, 387
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	719
BtrI	CACGTC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	656
Cac8I	GCNNGC	2 cut(s)	193, 504
CaiI	CAGNNNCTG	2 cut(s)	658, 805
CciI	TCATGA	1 cut(s)	836
Cfr13I	GGNCC	4 cut(s)	166, 386, 428, 612
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	196, 422, 720, 837
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	262, 809
DpnI	GATC	3 cut(s)	156, 364, 528
DpnII	GATC	3 cut(s)	154, 362, 526
DraIII	CACNNNGTG	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	3 cut(s)	162, 615, 719
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	428, 612
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	3 cut(s)	55, 460, 821
EcoT14I	CCWWGG	3 cut(s)	162, 615, 719
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	3 cut(s)	162, 615, 719
FaeI	CATG	4 cut(s)	199, 425, 723, 840
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	4 cut(s)	62, 131, 675, 798
FatI	CATG	4 cut(s)	195, 421, 719, 836
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	8 cut(s)	75, 134, 382, 385, 488, 491, 540, 806
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	8 cut(s)	75, 134, 382, 385, 488, 491, 540, 806
FspBI	CTAG	3 cut(s)	137, 192, 665
GluI	GCNGC	8 cut(s)	75, 134, 382, 385, 488, 491, 540, 806
GsuI	CTGGAG	3 cut(s)	256, 519, 782
HaeIII	GGCC	3 cut(s)	167, 218, 387
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	199, 425, 723, 840
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HinfI	GANTC	4 cut(s)	266, 434, 457, 811
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	3 cut(s)	331, 439, 578
Hpy166II	GTNNAC	2 cut(s)	628, 788
Hpy188I	TCNGA	4 cut(s)	253, 265, 713, 744
Hpy188III	TCNNGA	4 cut(s)	314, 431, 799, 837
Hpy8I	GTNNAC	2 cut(s)	628, 788
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	5 cut(s)	31, 200, 299, 566, 616
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	6 cut(s)	23, 77, 133, 628, 652, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	262, 809
HpySE526I	ACGT	1 cut(s)	344
Hsp92II	CATG	4 cut(s)	199, 425, 723, 840
Kzo9I	GATC	3 cut(s)	154, 362, 526
LmnI	GCTCC	2 cut(s)	164, 499
Lsp1109I	GCAGC	5 cut(s)	61, 145, 477, 526, 792
LweI	GCATC	2 cut(s)	32, 792
MaeI	CTAG	3 cut(s)	137, 192, 665
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	5 cut(s)	79, 179, 224, 319, 654
MalI	GATC	3 cut(s)	156, 364, 528
MboI	GATC	3 cut(s)	154, 362, 526
MboII	GAAGA	2 cut(s)	338, 367
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	504, 630
MluCI	AATT	4 cut(s)	69, 337, 369, 479
MlyI	GAGTC	3 cut(s)	428, 466, 820
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	19, 34, 37, 139, 280, 310, 547, 611, 654
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	3 cut(s)	381, 490, 539
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	4 cut(s)	57, 85, 462, 823
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	3 cut(s)	57, 462, 823
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	499
NciI	CCSGG	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	719
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	154, 362, 526
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	4 cut(s)	199, 425, 723, 840
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	224, 319, 654
PagI	TCATGA	1 cut(s)	836
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	8 cut(s)	76, 135, 383, 386, 489, 492, 541, 807
PleI	GAGTC	3 cut(s)	428, 465, 819
PpsI	GAGTC	3 cut(s)	428, 465, 819
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	55, 460, 821
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	3 cut(s)	55, 460, 821
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	4 cut(s)	166, 386, 428, 612
PstI	CTGCAG	1 cut(s)	79
PstNI	CAGNNNCTG	2 cut(s)	658, 805
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	504
SalI	GTCGAC	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	8 cut(s)	75, 134, 382, 385, 488, 491, 540, 806
Sau3AI	GATC	3 cut(s)	154, 362, 526
Sau96I	GGNCC	4 cut(s)	166, 386, 428, 612
SchI	GAGTC	3 cut(s)	428, 466, 820
ScrFI	CCNGG	4 cut(s)	57, 85, 462, 823
SduI	GDGCHC	2 cut(s)	504, 630
SfaNI	GCATC	2 cut(s)	32, 792
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	2 cut(s)	428, 612
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	69, 337, 369, 479
SsiI	CCGC	6 cut(s)	99, 143, 381, 384, 488, 506
SspMI	CTAG	3 cut(s)	137, 192, 665
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	4 cut(s)	55, 83, 460, 821
StyI	CCWWGG	3 cut(s)	162, 615, 719
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	111, 787
TaqII	GACCGA	2 cut(s)	338, 600
TasI	AATT	4 cut(s)	69, 337, 369, 479
TauI	GCSGC	3 cut(s)	384, 387, 490
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	3 cut(s)	224, 319, 654
TseI	GCWGC	5 cut(s)	74, 133, 490, 539, 805
Tsp45I	GTSAC	3 cut(s)	224, 319, 654
TspDTI	ATGAA	1 cut(s)	825
TspRI	CASTG	1 cut(s)	663
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	428, 612
XapI	RAATTY	2 cut(s)	369, 479
XmiI	GTMKAC	1 cut(s)	787
XspI	CTAG	3 cut(s)	137, 192, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.