Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016990

Physical Location & Seq

Genomic Coordinates Reverse (-)

74634893 .. 74635854

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCTTCAAGTCGATCGTACGCAGCTGCAGGAGCAGCCTTGCGCTGCAGAACCACCGGAGACGACGGCGGAGGCCGAAAAACCCGTTTTAGTTCCAAGCTTGATAACTCGAGCTACCGGCCACGAAACCTTCTCAAACTTCACCCACAGGTTCGCCTTGACCTTCCGAAGCTCCCAGAACCTCCCTTGCACGGCGGCGCTGCCTCTGGAAGCGGCTGGAATTCGAACCCGGTTGCACCCGAAACCTTCGATCAGGCGATTCGTGAGAATCCGACCGTCGGATTTTCATATAAATGCGAGGAGATGTTAATAAAGGCGATTCAGGAAGATCCGACCATTGGATCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.5

Weight (kDa)

9.06

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155031 RchiOBHm_Chr5g0021161
rosa_laevigata	RLG00000032586
rosa_multiflora	Rmu_ssc0000244.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057350 Rroxscaffold_1G00057360 Rroxscaffold_2G00095430 Rroxscaffold_2G00136940 Rroxscaffold_4G00289720 Rroxscaffold_4G00290680 Rroxscaffold_4G00306250 Rroxscaffold_7G00202860
rosa_samantha	Rh5DG153700
rosa_wichuraiana	Rw6G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 195, 213
AclWI	GGATC	2 cut(s)	323, 349
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	191, 278, 338
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	4 cut(s)	26, 100, 114, 172
AluI	AGCT	4 cut(s)	26, 100, 114, 172
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	323, 349
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	73, 119
ApeKI	GCWGC	5 cut(s)	23, 26, 35, 45, 200
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	45, 200
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	109
BbvI	GCAGC	5 cut(s)	13, 32, 35, 47, 187
BceAI	ACGGC	2 cut(s)	82, 208
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	54
BfmI	CTRYAG	2 cut(s)	27, 46
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	7 cut(s)	24, 27, 36, 46, 196, 201, 214
BlsI	GCNGC	7 cut(s)	25, 28, 37, 47, 197, 202, 215
Bme1390I	CCNGG	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 278, 338
Bse118I	RCCGGY	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	191, 278, 338
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	5 cut(s)	13, 32, 35, 47, 187
Bsh1285I	CGRYCG	2 cut(s)	17, 276
BshFI	GGCC	2 cut(s)	75, 121
BsiEI	CGRYCG	2 cut(s)	17, 276
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	57, 118, 230
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	191, 278, 338
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	75, 121
BsoBI	CYCGRG	1 cut(s)	109
Bsp119I	TTCGAA	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	14, 250, 328, 341
BspACI	CCGC	3 cut(s)	69, 195, 213
BspANI	GGCC	2 cut(s)	75, 121
BspMAI	CTGCAG	2 cut(s)	31, 50
BspPI	GGATC	2 cut(s)	323, 349
BspT104I	TTCGAA	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssMI	GATC	4 cut(s)	14, 250, 328, 341
Bst4CI	ACNGT	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	45, 200
BstKTI	GATC	4 cut(s)	17, 253, 331, 344
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	14, 250, 328, 341
BstMCI	CGRYCG	2 cut(s)	17, 276
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 35
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	27, 46
BstV1I	GCAGC	5 cut(s)	13, 32, 35, 47, 187
BstX2I	RGATCY	2 cut(s)	328, 341
BstYI	RGATCY	2 cut(s)	328, 341
BsuRI	GGCC	2 cut(s)	75, 121
CfoI	GCGC	2 cut(s)	45, 200
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	19
CviJI	RGCY	8 cut(s)	26, 38, 75, 100, 114, 121, 172, 216
CviKI_1	RGCY	8 cut(s)	26, 38, 75, 100, 114, 121, 172, 216
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	4 cut(s)	16, 252, 330, 343
DpnII	GATC	4 cut(s)	14, 250, 328, 341
EaeI	YGGCCR	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	54
FaiI	YATR	2 cut(s)	289, 291
Fnu4HI	GCNGC	7 cut(s)	24, 27, 36, 46, 196, 201, 214
Fsp4HI	GCNGC	7 cut(s)	24, 27, 36, 46, 196, 201, 214
GlaI	GCGC	2 cut(s)	44, 199
GluI	GCNGC	7 cut(s)	24, 27, 36, 46, 196, 201, 214
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	75, 121
HapII	CCGG	3 cut(s)	57, 118, 230
HhaI	GCGC	2 cut(s)	45, 200
Hin6I	GCGC	2 cut(s)	43, 198
HinP1I	GCGC	2 cut(s)	43, 198
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	259, 268, 319
HpaII	CCGG	3 cut(s)	57, 118, 230
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	168, 273, 281, 333
Hpy188III	TCNNGA	4 cut(s)	207, 263, 323, 348
Hpy99I	CGWCG	2 cut(s)	68, 281
HpyAV	CCTTC	4 cut(s)	15, 140, 173, 256
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	29, 48, 190, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 35
HspAI	GCGC	2 cut(s)	43, 198
Kzo9I	GATC	4 cut(s)	14, 250, 328, 341
LmnI	GCTCC	2 cut(s)	32, 177
Lsp1109I	GCAGC	5 cut(s)	13, 32, 35, 47, 187
MalI	GATC	4 cut(s)	16, 252, 330, 343
MboI	GATC	4 cut(s)	14, 250, 328, 341
MboII	GAAGA	2 cut(s)	336, 338
MflI	RGATCY	2 cut(s)	328, 341
MluCI	AATT	1 cut(s)	220
MmeI	TCCRAC	2 cut(s)	259, 296
MnlI	CCTC	4 cut(s)	65, 192, 214, 292
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	57, 118, 230
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	32, 35
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	4 cut(s)	14, 250, 328, 341
NspV	TTCGAA	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	259, 268, 319
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	7 cut(s)	25, 28, 37, 47, 197, 202, 215
Ple19I	CGATCG	1 cut(s)	17
PspLI	CGTACG	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	109
PstI	CTGCAG	2 cut(s)	31, 50
PsuI	RGATCY	2 cut(s)	328, 341
PvuI	CGATCG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	7 cut(s)	24, 27, 36, 46, 196, 201, 214
Sau3AI	GATC	4 cut(s)	14, 250, 328, 341
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	9 cut(s)	28, 102, 116, 132, 153, 165, 174, 184, 248
SfcI	CTRYAG	2 cut(s)	27, 46
Sfr274I	CTCGAG	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	69, 195, 213
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	13, 110, 224, 249
TasI	AATT	1 cut(s)	220
TauI	GCSGC	2 cut(s)	198, 216
TfiI	GAWTC	3 cut(s)	259, 268, 319
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseI	GCWGC	5 cut(s)	23, 26, 35, 45, 200
TspDTI	ATGAA	1 cut(s)	276
XapI	RAATTY	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.