Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016990

Physical Location & Seq

Genomic Coordinates Reverse (-)

11183773 .. 11202663

Gene Structure 18891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACTTTCATATCAACTCACCTCAAAAGATCCCTTCAATTCACGATTCAGAACTCGAATCAATTTCATCTCACATAACTCGCCTCGGCCTTGCGAAGCCACCGTGGCGCTCTTGGCTCACGCCTCACTGGAACGGCGGCGATGGAGTAGGGTTCGTACGGCCCCGATTTGGTTCCAAGCATGGTGAGTTGAGCTACCGGCCACGAAACCATCCCAAACTTCACTCGCAGGTTCGCCTCGACCTTCTCGAAGCTTCGGAACCACCCTTGCACGGCGGCGCCGCCTGCGGAAGCGGCGGAACTCGAACCGGATTTGCACCCGAAACCTTCAAACAGTATTTTGAATCTTTACTACAAGAAGTTAACGAAGGCACTGAGAGAGAAATTTCTAAAGCTGTAGAAAAGGCTGTGCCAGTAAAGAAAATGCAGGACAAGCTGGATAGATGTGTAATTGAGAAGAAATTTCTGGATGATGCAAGTCTCGGGAATTTGTTGCTGTACCTCGAGACAGGGAATACAGTAGAGTCTTCAAATGAAACAAAGGATGGTACGTCTTGCCAGTATCGATCAACTCGTGTCAGCCATCAAATATCAAATGAAACAAAGGACGGCACTATCCATTTTTCCCGAGTCTTCAATAATCAGATGGAAGAACGAGAAGTTTTCAGGATGAAAGGGTTGCTCCCGTACCAAGTTTGTATGGTAAGGGCAACTGATGTGATTTCCTTAAATTCTGCATGGTATACATATAGTAACATATCAAAAATGTGGGGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-RING_2 zf-UBP

Protein Analysis

259

Amino Acids

29.33

Weight (kDa)

8.29

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0155031 RchiOBHm_Chr5g0021161
rosa_laevigata	RLG00000032586
rosa_multiflora	Rmu_ssc0000244.1_g000032
rosa_roxburghii	Rroxscaffold_1G00057350 Rroxscaffold_1G00057360 Rroxscaffold_2G00095430 Rroxscaffold_2G00136940 Rroxscaffold_4G00289720 Rroxscaffold_4G00290680 Rroxscaffold_4G00306250 Rroxscaffold_7G00202860
rosa_samantha	Rh5DG153700
rosa_wichuraiana	Rw6G013260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	743
AciI	CCGC	6 cut(s)	138, 276, 282, 288, 294, 297
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	4 cut(s)	384, 461, 487, 730
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	4 cut(s)	159, 500, 550, 689
AfiI	CCNNNNNNNGG	2 cut(s)	170, 272
AgsI	TTSAA	5 cut(s)	39, 331, 344, 531, 637
AluBI	AGCT	4 cut(s)	195, 254, 395, 436
AluI	AGCT	4 cut(s)	195, 254, 395, 436
Alw26I	GTCTC	2 cut(s)	485, 500
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	3 cut(s)	482, 503, 627
AoxI	GGCC	3 cut(s)	88, 161, 200
ApoI	RAATTY	4 cut(s)	384, 461, 487, 730
AspLEI	GCGC	2 cut(s)	111, 281
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	12, 197
AvaI	CYCGRG	3 cut(s)	482, 503, 627
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	2 cut(s)	519, 625
BccI	CCATC	5 cut(s)	137, 219, 539, 591, 640
BceAI	ACGGC	4 cut(s)	151, 176, 289, 625
BcoDI	GTCTC	2 cut(s)	485, 500
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	2 cut(s)	112, 282
BfuAI	ACCTGC	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	139, 277, 282, 295
BlsI	GCNGC	4 cut(s)	140, 278, 283, 296
BmeT110I	CYCGRG	3 cut(s)	482, 503, 627
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	164, 175, 261, 280
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	519, 625
Bsa29I	ATCGAT	1 cut(s)	565
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	85, 104
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 272
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	3 cut(s)	134, 413, 559
BseCI	ATCGAT	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	85, 104
BseGI	GGATG	4 cut(s)	211, 475, 550, 675
BseLI	CCNNNNNNNGG	2 cut(s)	170, 272
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	3 cut(s)	134, 413, 559
BshFI	GGCC	3 cut(s)	90, 163, 202
BshNI	GGYRCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	565
BsiHKCI	CYCGRG	3 cut(s)	482, 503, 627
BsiSI	CCGG	2 cut(s)	199, 309
BsiWI	CGTACG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	170, 272
BsmAI	GTCTC	2 cut(s)	485, 500
BsnI	GGCC	3 cut(s)	90, 163, 202
BsoBI	CYCGRG	3 cut(s)	482, 503, 627
Bsp143I	GATC	2 cut(s)	30, 566
BspACI	CCGC	6 cut(s)	138, 276, 282, 288, 294, 297
BspANI	GGCC	3 cut(s)	90, 163, 202
BspCNI	CTCAG	1 cut(s)	367
BspDI	ATCGAT	1 cut(s)	565
BspLI	GGNNCC	4 cut(s)	164, 175, 261, 280
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	3 cut(s)	134, 413, 559
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	85, 104
BssMI	GATC	2 cut(s)	30, 566
BssNAI	GTATAC	1 cut(s)	744
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	573
Bst1107I	GTATAC	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	573
Bst4CI	ACNGT	4 cut(s)	105, 336, 520, 777
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	4 cut(s)	211, 475, 550, 675
BstH2I	RGCGCY	2 cut(s)	112, 282
BstHHI	GCGC	2 cut(s)	111, 281
BstKTI	GATC	2 cut(s)	33, 569
BstMAI	GTCTC	2 cut(s)	485, 500
BstMBI	GATC	2 cut(s)	30, 566
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 115, 285, 294, 433
BstSFI	CTRYAG	1 cut(s)	396
BstV2I	GAAGAC	2 cut(s)	519, 625
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BstZ17I	GTATAC	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	565
BsuRI	GGCC	3 cut(s)	90, 163, 202
BsuTUI	ATCGAT	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	104
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	211, 475, 550, 675
BtsIMutI	CAGTG	2 cut(s)	127, 372
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	2 cut(s)	111, 281
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	565
Csp6I	GTAC	4 cut(s)	158, 499, 549, 688
CviAII	CATG	2 cut(s)	182, 738
CviQI	GTAC	4 cut(s)	158, 499, 549, 688
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	280
DpnI	GATC	2 cut(s)	32, 568
DpnII	GATC	2 cut(s)	30, 566
EaeI	YGGCCR	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	312
Eco88I	CYCGRG	3 cut(s)	482, 503, 627
EgeI	GGCGCC	1 cut(s)	280
EheI	GGCGCC	1 cut(s)	280
FaeI	CATG	2 cut(s)	185, 741
FaiI	YATR	9 cut(s)	12, 77, 183, 701, 739, 744, 748, 750, 758
FatI	CATG	2 cut(s)	181, 737
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	4 cut(s)	139, 277, 282, 295
FokI	GGATG	4 cut(s)	198, 482, 557, 682
Fsp4HI	GCNGC	4 cut(s)	139, 277, 282, 295
GlaI	GCGC	2 cut(s)	110, 280
GluI	GCNGC	4 cut(s)	139, 277, 282, 295
HaeII	RGCGCY	2 cut(s)	112, 282
HaeIII	GGCC	3 cut(s)	90, 163, 202
HapII	CCGG	2 cut(s)	199, 309
HhaI	GCGC	2 cut(s)	111, 281
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	185, 741
Hin6I	GCGC	2 cut(s)	109, 279
HinP1I	GCGC	2 cut(s)	109, 279
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	5 cut(s)	47, 59, 344, 524, 630
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	199, 309
HphI	GGTGA	2 cut(s)	12, 197
Hpy166II	GTNNAC	2 cut(s)	364, 744
Hpy188I	TCNGA	3 cut(s)	52, 259, 645
Hpy188III	TCNNGA	7 cut(s)	44, 248, 467, 484, 505, 627, 667
Hpy8I	GTNNAC	2 cut(s)	364, 744
HpyAV	CCTTC	4 cut(s)	45, 254, 337, 362
HpyCH4III	ACNGT	4 cut(s)	105, 336, 520, 777
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	5 cut(s)	271, 317, 427, 476, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 115, 285, 294, 433
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	185, 741
HspAI	GCGC	2 cut(s)	109, 279
KasI	GGCGCC	1 cut(s)	278
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	30, 566
LmnI	GCTCC	1 cut(s)	687
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	2 cut(s)	32, 568
MboI	GATC	2 cut(s)	30, 566
MboII	GAAGA	4 cut(s)	469, 519, 625, 662
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	7 cut(s)	39, 63, 384, 450, 461, 487, 730
Mly113I	GGCGCC	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	533, 639
MnlI	CCTC	5 cut(s)	33, 95, 135, 248, 512
MseI	TTAA	2 cut(s)	363, 728
MspI	CCGG	2 cut(s)	199, 309
MwoI	GCNNNNNNNGC	5 cut(s)	106, 115, 285, 294, 433
NarI	GGCGCC	1 cut(s)	279
NdeII	GATC	2 cut(s)	30, 566
NlaIII	CATG	2 cut(s)	185, 741
NlaIV	GGNNCC	4 cut(s)	164, 175, 261, 280
NmeAIII	GCCGAG	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 571
PfeI	GAWTC	3 cut(s)	47, 59, 344
Pfl23II	CGTACG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	140, 278, 283, 296
PleI	GAGTC	2 cut(s)	532, 638
PluTI	GGCGCC	1 cut(s)	282
PpsI	GAGTC	2 cut(s)	532, 638
PspLI	CGTACG	1 cut(s)	157
PspN4I	GGNNCC	4 cut(s)	164, 175, 261, 280
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	4 cut(s)	159, 500, 550, 689
RsaNI	GTAC	4 cut(s)	158, 499, 549, 688
SaqAI	TTAA	2 cut(s)	363, 728
SatI	GCNGC	4 cut(s)	139, 277, 282, 295
Sau3AI	GATC	2 cut(s)	30, 566
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	2 cut(s)	533, 639
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	396
SfoI	GGCGCC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	7 cut(s)	39, 63, 384, 450, 461, 487, 730
SsiI	CCGC	6 cut(s)	138, 276, 282, 288, 294, 297
SspDI	GGCGCC	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	105, 336, 520, 777
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	6 cut(s)	57, 240, 249, 304, 504, 565
TasI	AATT	7 cut(s)	39, 63, 384, 450, 461, 487, 730
TauI	GCSGC	4 cut(s)	141, 279, 284, 297
TfiI	GAWTC	3 cut(s)	47, 59, 344
Tru1I	TTAA	2 cut(s)	363, 728
Tru9I	TTAA	2 cut(s)	363, 728
TscAI	CASTG	2 cut(s)	134, 379
TspDTI	ATGAA	4 cut(s)	57, 549, 612, 686
TspRI	CASTG	2 cut(s)	134, 379
XapI	RAATTY	4 cut(s)	384, 461, 487, 730
XhoI	CTCGAG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.