Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005801

Physical Location & Seq

Genomic Coordinates Forward (+)

74489333 .. 74492641

Gene Structure 3309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTAGTAAATCTTCACAGTGGAGTCATAAGAACTTTGTAAACTACCAAGCCATGAAAAAGGTTCTTGAAATAAGGGAACAACTCAGAAGAACAGCTCGAAGATTAGGCATTGACTTGAAATCTTGTGAAAGAGATACAGTGGTAGTGAGAAAGGCCATTACTTATGGATTTTTCGCTAATGCGTGTGTTTCAGAAGCATCAAGTCACGATGGAAAGTACAAAACTATCAGAGGTTCTCAAGAAGTTTATATTCACCCCTCATCTGTGTTATTCAGGTTAGTAAAGAGAGAGAATCTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

9.96

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	66 - 109	1.1e-08	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18465
fragaria_vesca	FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450
malus_domestica	MD05G1305600.v1.1
prunus_persica	Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1
pyrus_communis	pycom05g28290
rosa_chinensis	RchiOBHm_Chr2g0158101 RchiOBHm_Chr5g0009991
rosa_laevigata	RLG00000031717
rosa_multiflora	Rmu_sc0001648.1_g000001 Rmu_sc0002275.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066170
rosa_rugosa	Rorug04G0448300 Rorug04G0448400 Rorug04G0448500
rosa_samantha	Rh5AG079200 Rh5BG074000 Rh5CG086600 Rh5DG074700
rosa_wichuraiana	Rw5G007330 Rw7G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	119, 169
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AoxI	GGCC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	20, 296
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BccI	CCATC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	69, 190
BstDEI	CTNAG	1 cut(s)	134
BstEII	GGTNACC	1 cut(s)	8
BstPI	GGTNACC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	74, 195
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	14, 103
CviJI	RGCY	3 cut(s)	101, 146, 206
CviKI_1	RGCY	3 cut(s)	101, 146, 206
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
FaeI	CATG	2 cut(s)	17, 106
FaiI	YATR	6 cut(s)	15, 78, 104, 216, 300, 352
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	2 cut(s)	13, 102
FblI	GTMKAC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	17, 106
HinfI	GANTC	2 cut(s)	73, 343
HphI	GGTGA	2 cut(s)	20, 296
Hpy166II	GTNNAC	2 cut(s)	34, 91
Hpy188I	TCNGA	4 cut(s)	137, 244, 281, 348
Hpy188III	TCNNGA	3 cut(s)	116, 257, 290
Hpy8I	GTNNAC	2 cut(s)	34, 91
HpyCH4III	ACNGT	2 cut(s)	69, 190
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	17, 106
LpnPI	CCDG	1 cut(s)	310
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	8, 254
MboII	GAAGA	4 cut(s)	38, 54, 150, 162
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	275, 319
NlaIII	CATG	2 cut(s)	17, 106
NmuCI	GTSAC	2 cut(s)	8, 254
PfeI	GAWTC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	82
SetI	ASST	4 cut(s)	114, 148, 286, 329
SfaNI	GCATC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	69, 190
TaqI	TCGA	1 cut(s)	148
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	343
TscAI	CASTG	2 cut(s)	74, 195
TseFI	GTSAC	2 cut(s)	8, 254
Tsp45I	GTSAC	2 cut(s)	8, 254
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	74, 195
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.