Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005801

Physical Location & Seq

Genomic Coordinates Forward (+)

60380560 .. 60381446

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0448400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAATCAGAAGTTCGGCGGAGGGAAGCTGCCGACCGGCACTCCGTCGCTGGCTTGGTCCAGCGTCGTCGTCGTCGTCTCACTTCTCGCCGGAGCCTCCGTCGTCCACAATCTCTACAAGCCCGATCTTACATTGCCTCCTGTCGATGGTGTTAATGTGACCAAGGAGAAGGAACCGGAGAAGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

63

Amino Acids

6.66

Weight (kDa)

8.06

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4516	PF14990	10 - 48	1.7e-17	Domain of unknown function (DUF4516)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18465
fragaria_vesca	FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450
malus_domestica	MD05G1305600.v1.1
prunus_persica	Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1
pyrus_communis	pycom05g28290
rosa_chinensis	RchiOBHm_Chr2g0158101 RchiOBHm_Chr5g0009991
rosa_laevigata	RLG00000031717
rosa_multiflora	Rmu_sc0001648.1_g000001 Rmu_sc0002275.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066170
rosa_rugosa	Rorug04G0448300 Rorug04G0448400 Rorug04G0448500
rosa_samantha	Rh5AG079200 Rh5BG074000 Rh5CG086600 Rh5DG074700
rosa_wichuraiana	Rw5G007330 Rw7G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	146
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	94, 174
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	6 cut(s)	25, 55, 84, 114, 121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	36, 90, 176
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	94, 174
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	1 cut(s)	52
CviJI	RGCY	4 cut(s)	28, 53, 95, 121
CviKI_1	RGCY	4 cut(s)	28, 53, 95, 121
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	3 cut(s)	36, 90, 176
HgaI	GACGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	36, 90, 176
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	6 cut(s)	49, 68, 71, 74, 77, 104
HpyAV	CCTTC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	35, 49, 73, 103, 153
Lsp1109I	GCAGC	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	14, 106, 147
MseI	TTAA	1 cut(s)	153
MspI	CCGG	3 cut(s)	36, 90, 176
NdeII	GATC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	94, 174
NmuCI	GTSAC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	94, 174
PspPI	GGNCC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	1 cut(s)	30
SinI	GGWCC	1 cut(s)	57
SsiI	CCGC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	33, 88
VpaK11BI	GGWCC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.