Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005801

Physical Location & Seq

Genomic Coordinates Forward (+)

38718510 .. 38723115

Gene Structure 4606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCATAGAAATTATTGCAAAGGCAGTGGTAGGATCGAGTCCTCTTATGTAGATTTCTTCGATGGAGGGTTGGAGATGGAAGAAGGATTAGGGCCAAGAGAGATTGGGGAGTATGAATCATTTGCAGAGCTGAGTGATGAAGGGAATCAAGAATTTACTGTAGTGTCAGTTGAATCTTTCCTTCCTGATGAACTGTTGGAGCGGATAATAGCATATCTACCGATTGCAAGCATTTTCAGAGCACAGTCTGTGCAAAAGGTGGAATGTGTTGTAATGGTAGATGAAGCTCATGAAAGGTCTATCTCCACGGACATTTTATTGGGTCTCCTGAAAAAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTAGTAAATTTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATGAAAAAGGTTCTTGAAATAAGGGAACAACTCAGAAGAACAGCTCGAAGATTAGGCATTGACTTGAAATCTTGTGAAAGAGATACAGTGGTAGTGAGAAAGGCCATTACTTATGGATTTTTCGCTAATGCGTGTGTTTCAGAAGCATCAAGTCACGATGGAAAGTACAAAACTATCAGAGGTTCTCAAGAAGTTTATATTCACCCCTCATCTGTGTTATTCAGAGTTAATCCCAAGTGGGTGGTTTACCATTCTCTTGTCTCAACTGAAAAGCAATACATGCGGAATGTCATTTCGATAGATCCTTCTTGGCTCACAGAGGCAGCTCCACATTTTTACCAAAAGCAGCGACCCAATCCTATGCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

267

Amino Acids

30.7

Weight (kDa)

6.76

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	176 - 255	1.3e-23	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18465
fragaria_vesca	FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450
malus_domestica	MD05G1305600.v1.1
prunus_persica	Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1
pyrus_communis	pycom05g28290
rosa_chinensis	RchiOBHm_Chr2g0158101 RchiOBHm_Chr5g0009991
rosa_laevigata	RLG00000031717
rosa_multiflora	Rmu_sc0001648.1_g000001 Rmu_sc0002275.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066170
rosa_rugosa	Rorug04G0448300 Rorug04G0448400 Rorug04G0448500
rosa_samantha	Rh5AG079200 Rh5BG074000 Rh5CG086600 Rh5DG074700
rosa_wichuraiana	Rw5G007330 Rw7G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	2 cut(s)	202, 715
AclWI	GGATC	2 cut(s)	41, 728
AcsI	RAATTY	2 cut(s)	152, 389
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	173, 449, 499
AleI	CACNNNNGTG	1 cut(s)	400
AluBI	AGCT	4 cut(s)	130, 287, 476, 758
AluI	AGCT	4 cut(s)	130, 287, 476, 758
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	329, 697
AlwI	GGATC	2 cut(s)	41, 728
AoxI	GGCC	2 cut(s)	92, 534
ApeKI	GCWGC	2 cut(s)	755, 778
ApoI	RAATTY	2 cut(s)	152, 389
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	350, 626
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	767, 790
BccI	CCATC	3 cut(s)	56, 70, 584
BcoDI	GTCTC	2 cut(s)	329, 697
BfaI	CTAG	2 cut(s)	384, 802
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	756, 779
BlsI	GCNGC	2 cut(s)	757, 780
BmgT120I	GGNCC	1 cut(s)	92
BmsI	GCATC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	122, 478
BseXI	GCAGC	2 cut(s)	767, 790
BshFI	GGCC	2 cut(s)	94, 536
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	329, 697
BsnI	GGCC	2 cut(s)	94, 536
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	33, 733
BspACI	CCGC	2 cut(s)	202, 715
BspANI	GGCC	2 cut(s)	94, 536
BspCNI	CTCAG	2 cut(s)	123, 477
BspHI	TCATGA	1 cut(s)	289
BspPI	GGATC	2 cut(s)	41, 728
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	33, 733
Bst4CI	ACNGT	5 cut(s)	160, 195, 246, 399, 520
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	131, 464
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	338
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	36, 736
BstMAI	GTCTC	2 cut(s)	329, 697
BstMBI	GATC	2 cut(s)	33, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstNSI	RCATGY	1 cut(s)	715
BstPI	GGTNACC	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	767, 790
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	94, 536
BtgI	CCRYGG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	31, 404, 525
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	598
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	4 cut(s)	290, 344, 433, 712
CviJI	RGCY	8 cut(s)	94, 130, 287, 431, 476, 536, 745, 758
CviKI_1	RGCY	8 cut(s)	94, 130, 287, 431, 476, 536, 745, 758
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	131, 464
DpnI	GATC	2 cut(s)	35, 735
DpnII	GATC	2 cut(s)	33, 733
Eco31I	GGTCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	293, 347, 436, 715
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	4 cut(s)	289, 343, 432, 711
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	756, 779
Fsp4HI	GCNGC	2 cut(s)	756, 779
FspBI	CTAG	2 cut(s)	384, 802
GluI	GCNGC	2 cut(s)	756, 779
HaeIII	GGCC	2 cut(s)	94, 536
Hin1II	CATG	4 cut(s)	293, 347, 436, 715
HinfI	GANTC	4 cut(s)	38, 116, 145, 173
HphI	GGTGA	2 cut(s)	350, 626
Hpy166II	GTNNAC	3 cut(s)	364, 421, 679
Hpy188I	TCNGA	5 cut(s)	239, 467, 574, 611, 656
Hpy188III	TCNNGA	7 cut(s)	149, 185, 290, 328, 446, 587, 620
Hpy8I	GTNNAC	3 cut(s)	364, 421, 679
HpyAV	CCTTC	4 cut(s)	77, 134, 191, 747
HpyCH4III	ACNGT	5 cut(s)	160, 195, 246, 399, 520
HpyCH4V	TGCA	5 cut(s)	4, 18, 125, 227, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HpyF3I	CTNAG	2 cut(s)	131, 464
Hsp92II	CATG	4 cut(s)	293, 347, 436, 715
Kzo9I	GATC	2 cut(s)	33, 733
LmnI	GCTCC	2 cut(s)	199, 763
LpnPI	CCDG	2 cut(s)	198, 341
Lsp1109I	GCAGC	2 cut(s)	767, 790
LweI	GCATC	1 cut(s)	587
MaeI	CTAG	2 cut(s)	384, 802
MaeIII	GTNAC	2 cut(s)	338, 584
MalI	GATC	2 cut(s)	35, 735
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	33, 733
MboII	GAAGA	5 cut(s)	49, 92, 368, 480, 492
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	10, 152, 389
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	51, 177
MnlI	CCTC	5 cut(s)	52, 59, 605, 649, 745
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	712
NdeII	GATC	2 cut(s)	33, 733
NlaIII	CATG	4 cut(s)	293, 347, 436, 715
NmuCI	GTSAC	2 cut(s)	338, 584
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	400
PagI	TCATGA	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	116, 145, 173
PkrI	GCNGC	2 cut(s)	757, 780
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	2 cut(s)	756, 779
Sau3AI	GATC	2 cut(s)	33, 733
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	132, 261, 289, 299, 444, 478, 616, 760
SfaNI	GCATC	1 cut(s)	587
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	3 cut(s)	10, 152, 389
SsiI	CCGC	2 cut(s)	202, 715
SspMI	CTAG	2 cut(s)	384, 802
TaaI	ACNGT	5 cut(s)	160, 195, 246, 399, 520
TaqI	TCGA	4 cut(s)	36, 60, 478, 728
TasI	AATT	3 cut(s)	10, 152, 389
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	3 cut(s)	116, 145, 173
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	3 cut(s)	31, 404, 525
TseFI	GTSAC	2 cut(s)	338, 584
TseI	GCWGC	2 cut(s)	755, 778
Tsp45I	GTSAC	2 cut(s)	338, 584
TspDTI	ATGAA	6 cut(s)	129, 153, 204, 297, 306, 449
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	3 cut(s)	31, 404, 525
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	2 cut(s)	152, 389
XceI	RCATGY	1 cut(s)	715
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	384, 802
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.