Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005801

Physical Location & Seq

Genomic Coordinates Reverse (-)

87675877 .. 87678279

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTTTAAACTACCAAGCCATGAAAAAGGTTCTTGAAATAAGGGAACAACTCAGAAGAACAGCTCGAAGATTAGGCATTGACTTGAAATCTTGTGAAAGAGATACAGTGGTAGTGAGAAAGGCCATTACTTATGGATTTTTCGCTAATGCGTGTGTTTCTGAAGCATCAAGTCACGATGGAAAGTACAAAACTATCAGAGGTTCTCAAGAAGTTTATATTCACCCCTCATCTGTGCTATTCAGAGTTAATCCCAAGTGGGTGGTTTACCATTCTCTTGTCTCAACTGAAAAGCAATACATGCGGAATGTCATTTCGATTGATCCTTCTTGGCTCACAGAGGCAGCTCCACATTTTTACCAAAAGCAGCGACCCAATCCTATGCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

157

Amino Acids

18.3

Weight (kDa)

9.77

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	66 - 145	4e-24	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18465
fragaria_vesca	FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450
malus_domestica	MD05G1305600.v1.1
prunus_persica	Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1
pyrus_communis	pycom05g28290
rosa_chinensis	RchiOBHm_Chr2g0158101 RchiOBHm_Chr5g0009991
rosa_laevigata	RLG00000031717
rosa_multiflora	Rmu_sc0001648.1_g000001 Rmu_sc0002275.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066170
rosa_rugosa	Rorug04G0448300 Rorug04G0448400 Rorug04G0448500
rosa_samantha	Rh5AG079200 Rh5BG074000 Rh5CG086600 Rh5DG074700
rosa_wichuraiana	Rw5G007330 Rw7G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	398
AcuI	CTGAAG	2 cut(s)	32, 264
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	119, 169
AleI	CACNNNNGTG	1 cut(s)	70
AluBI	AGCT	2 cut(s)	146, 428
AluI	AGCT	2 cut(s)	146, 428
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	425, 448
AsuHPI	GGTGA	2 cut(s)	20, 296
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BbvI	GCAGC	2 cut(s)	437, 460
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	472
BisI	GCNGC	2 cut(s)	426, 449
BlsI	GCNGC	2 cut(s)	427, 450
BmsI	GCATC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	437, 460
BshFI	GGCC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	398
BssMI	GATC	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	69, 190
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	134
BstEII	GGTNACC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	437, 460
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	74, 195
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	14, 103, 382
CviJI	RGCY	5 cut(s)	101, 146, 206, 415, 428
CviKI_1	RGCY	5 cut(s)	101, 146, 206, 415, 428
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DraI	TTTAAA	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	32, 264
Eco91I	GGTNACC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	8
FaeI	CATG	3 cut(s)	17, 106, 385
FaiI	YATR	7 cut(s)	15, 78, 104, 216, 300, 383, 464
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	3 cut(s)	13, 102, 381
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	426, 449
Fsp4HI	GCNGC	2 cut(s)	426, 449
FspBI	CTAG	1 cut(s)	472
GluI	GCNGC	2 cut(s)	426, 449
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	17, 106, 385
HphI	GGTGA	2 cut(s)	20, 296
Hpy166II	GTNNAC	2 cut(s)	34, 349
Hpy188I	TCNGA	4 cut(s)	137, 244, 281, 326
Hpy188III	TCNNGA	3 cut(s)	116, 257, 290
Hpy8I	GTNNAC	2 cut(s)	34, 349
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	2 cut(s)	69, 190
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	17, 106, 385
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	1 cut(s)	39
Lsp1109I	GCAGC	2 cut(s)	437, 460
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	8, 254
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	4 cut(s)	38, 54, 150, 162
MnlI	CCTC	3 cut(s)	275, 319, 415
MseI	TTAA	2 cut(s)	89, 330
MslI	CAYNNNNRTG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	17, 106, 385
NmuCI	GTSAC	2 cut(s)	8, 254
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	427, 450
PspEI	GGTNACC	1 cut(s)	8
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	89, 330
SatI	GCNGC	2 cut(s)	426, 449
Sau3AI	GATC	1 cut(s)	403
SetI	ASST	4 cut(s)	114, 148, 286, 430
SfaNI	GCATC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	472
TaaI	ACNGT	2 cut(s)	69, 190
TaqI	TCGA	2 cut(s)	148, 398
TatI	WGTACW	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	89, 330
Tru9I	TTAA	2 cut(s)	89, 330
TscAI	CASTG	2 cut(s)	74, 195
TseFI	GTSAC	2 cut(s)	8, 254
TseI	GCWGC	2 cut(s)	425, 448
Tsp45I	GTSAC	2 cut(s)	8, 254
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	74, 195
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.