Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001648.1

Orthogroup ID

OG0005801

Physical Location & Seq

Genomic Coordinates Reverse (-)

337 .. 1465

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001648.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaaaaaggttcttgaaataagggaacaactcagaagaacagctcgaagattaggcattcacttgaaatcttgtgaaagagatacagtggtagtgagaaaggccattacttatggatttttcgctaatgcgtgtgtttcagaagcatcaagtcacgatggaaagtacaaaactatcagaggttctcaagaagtttatattcacccctcatctgtgttattcagagttaatcccaagtgggtggtttaccattctcttgtctcaactgaaaagcaatacatgcggaatgtcatttcgatagatccttcttggctcacagaggcagctccacatttttaccaaaagcagcgacccaatcctatgcttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

123

Amino Acids

14.36

Weight (kDa)

9.95

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18465
fragaria_vesca	FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450 FvH4_5g21450
malus_domestica	MD05G1305600.v1.1
prunus_persica	Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1 Prupe.4G056700_v2.0.a1
pyrus_communis	pycom05g28290
rosa_chinensis	RchiOBHm_Chr2g0158101 RchiOBHm_Chr5g0009991
rosa_laevigata	RLG00000031717
rosa_multiflora	Rmu_sc0001648.1_g000001 Rmu_sc0002275.1_g000005
rosa_roxburghii	Rroxscaffold_1G00066170
rosa_rugosa	Rorug04G0448300 Rorug04G0448400 Rorug04G0448500
rosa_samantha	Rh5AG079200 Rh5BG074000 Rh5CG086600 Rh5DG074700
rosa_wichuraiana	Rw5G007330 Rw7G028410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	1 cut(s)	296
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	17, 67
AluBI	AGCT	2 cut(s)	44, 326
AluI	AGCT	2 cut(s)	44, 326
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	323, 346
AsuHPI	GGTGA	1 cut(s)	194
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BbvI	GCAGC	2 cut(s)	335, 358
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	370
BisI	GCNGC	2 cut(s)	324, 347
BlsI	GCNGC	2 cut(s)	325, 348
BmsI	GCATC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	335, 358
BshFI	GGCC	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	296
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	335, 358
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	4 cut(s)	44, 104, 313, 326
CviKI_1	RGCY	4 cut(s)	44, 104, 313, 326
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
FaeI	CATG	1 cut(s)	283
FaiI	YATR	4 cut(s)	114, 198, 281, 362
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	324, 347
Fsp4HI	GCNGC	2 cut(s)	324, 347
FspBI	CTAG	1 cut(s)	370
GluI	GCNGC	2 cut(s)	324, 347
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	35, 142, 179, 224
Hpy188III	TCNNGA	3 cut(s)	14, 155, 188
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	2 cut(s)	335, 358
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	48, 60
MflI	RGATCY	1 cut(s)	301
MnlI	CCTC	3 cut(s)	173, 217, 313
MseI	TTAA	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	283
PctI	GAATGC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	325, 348
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	324, 347
Sau3AI	GATC	1 cut(s)	301
SetI	ASST	4 cut(s)	12, 46, 184, 328
SfaNI	GCATC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	46, 296
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	323, 346
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.