Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015671

Physical Location & Seq

Genomic Coordinates Forward (+)

75638845 .. 75641019

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTACAAATTACAGTGGCCCAGAGGTGGATATCTACAGTGGCCCAGAGGTGTAACACTTTACCACCTCTTATTCGGCTGCCCATCACTACTGAGCTTTCAATATGGCAGACTCTCTATTCCTCAGCAGATCTAATACATAGAATGACAGCATGGGAAGCAAAGGATCGTATCAACATCCGAGAAATCAAGAACCACAGATGGTTTCAAGGTGGGGATCAAATGTTCTTAAATGATCCTCATGGCATTTCTGATCAGGGTATTGACAACAATATCCTATTGGAGGCTATCAAGAAGACGCAATGTGAGAGGGAATATCTTATTCAGTCTCTAATTCAGGGGGAACACACAGGAAACCACCACATACAAGCTGTTGAAGAAGAAGATGCAAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004679 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009314 GO:0009416 GO:0009453 GO:0009605 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0019954 GO:0023052 GO:0031156 GO:0031285 GO:0032101 GO:0032104 GO:0032107 GO:0034641 GO:0034654 GO:0035556 GO:0036211 GO:0040011 GO:0042330 GO:0042331 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0045595 GO:0046034 GO:0046390 GO:0046483 GO:0046956 GO:0048518 GO:0048519 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051716 GO:0052128 GO:0055086 GO:0060176 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0072522 GO:0080134 GO:0080135 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901261 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1903664 GO:1903665 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

AdenylateSensor Pkinase

Protein Analysis

132

Amino Acids

15.29

Weight (kDa)

5.82

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015671)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43230 FvH4_6g43260
rosa_chinensis	RchiOBHm_Chr2g0159521 RchiOBHm_Chr4g0423441
rosa_laevigata	RLG00000021162
rosa_roxburghii	Rroxscaffold_2G00090430
rosa_samantha	Rh2AG543500 Rh2AG543900 Rh2BG556000 Rh2BG556500 Rh2CG526700 Rh2DG565400 Rh2DG565500 Rh4CG323200 Rh6BG054500
rosa_wichuraiana	Rw2G044940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	174, 225, 230
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	27, 283
AgsI	TTSAA	3 cut(s)	102, 209, 377
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	97, 371
AluI	AGCT	2 cut(s)	97, 371
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	174, 225, 230
AoxI	GGCC	2 cut(s)	18, 42
ApeKI	GCWGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	19, 43
BbsI	GAAGAC	1 cut(s)	302
BbvCI	CCTCAGC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	92, 195
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	36
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	19, 43
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 283
Bse3DI	GCAATG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	27, 283
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	84, 138
BseXI	GCAGC	1 cut(s)	66
BshFI	GGCC	2 cut(s)	20, 44
BslI	CCNNNNNNNGG	2 cut(s)	27, 283
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	20, 44
Bsp143I	GATC	5 cut(s)	130, 166, 217, 235, 253
BspANI	GGCC	2 cut(s)	20, 44
BspCNI	CTCAG	2 cut(s)	85, 137
BspPI	GGATC	3 cut(s)	174, 225, 230
BsrDI	GCAATG	1 cut(s)	308
BssMI	GATC	5 cut(s)	130, 166, 217, 235, 253
Bst4CI	ACNGT	2 cut(s)	16, 40
BstDEI	CTNAG	2 cut(s)	93, 124
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	5 cut(s)	133, 169, 220, 238, 256
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	5 cut(s)	130, 166, 217, 235, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	20, 44
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	21, 45
Cfr13I	GGNCC	2 cut(s)	19, 43
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	2 cut(s)	153, 242
CviJI	RGCY	6 cut(s)	20, 44, 79, 97, 287, 371
CviKI_1	RGCY	6 cut(s)	20, 44, 79, 97, 287, 371
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	93, 124
DpnI	GATC	5 cut(s)	132, 168, 219, 237, 255
DpnII	GATC	5 cut(s)	130, 166, 217, 235, 253
Eco32I	GATATC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	33
FaeI	CATG	2 cut(s)	156, 245
FaiI	YATR	5 cut(s)	106, 141, 154, 243, 365
FatI	CATG	2 cut(s)	152, 241
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	20, 44
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	156, 245
HinfI	GANTC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	182, 253
Hpy188III	TCNNGA	2 cut(s)	190, 292
HpyCH4III	ACNGT	2 cut(s)	16, 40
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	93, 124
Hsp92II	CATG	2 cut(s)	156, 245
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	130, 166, 217, 235, 253
LpnPI	CCDG	5 cut(s)	35, 59, 242, 323, 336
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	132, 168, 219, 237, 255
MboI	GATC	5 cut(s)	130, 166, 217, 235, 253
MboII	GAAGA	4 cut(s)	307, 389, 392, 395
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	2 cut(s)	9, 333
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	18, 42, 78, 133, 249, 277, 303
MseI	TTAA	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	5 cut(s)	130, 166, 217, 235, 253
NlaIII	CATG	2 cut(s)	156, 245
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspPI	GGNCC	2 cut(s)	19, 43
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	5 cut(s)	130, 166, 217, 235, 253
Sau96I	GGNCC	2 cut(s)	19, 43
SchI	GAGTC	1 cut(s)	106
SetI	ASST	6 cut(s)	29, 53, 70, 99, 214, 373
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	9, 333
TaaI	ACNGT	2 cut(s)	16, 40
TasI	AATT	2 cut(s)	9, 333
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	21, 45
TseI	GCWGC	1 cut(s)	79
TspRI	CASTG	2 cut(s)	21, 45
XagI	CCTNNNNNAGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.