RIO1 family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g43230 FvH4_6g43260 |
| rosa_chinensis | RchiOBHm_Chr2g0159521 RchiOBHm_Chr4g0423441 |
| rosa_laevigata | RLG00000021162 |
| rosa_roxburghii | Rroxscaffold_2G00090430 |
| rosa_samantha | Rh2AG543500 Rh2AG543900 Rh2BG556000 Rh2BG556500 Rh2CG526700 Rh2DG565400 Rh2DG565500 Rh4CG323200 Rh6BG054500 |
| rosa_wichuraiana | Rw2G044940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 401 |
| Acc36I | ACCTGC | 1 cut(s) | 401 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 695 |
| AciI | CCGC | 4 cut(s) | 257, 654, 1171, 1335 |
| AclWI | GGATC | 6 cut(s) | 153, 651, 1538, 1551, 1611, 1616 |
| AcoI | YGGCCR | 1 cut(s) | 439 |
| AcsI | RAATTY | 2 cut(s) | 523, 1342 |
| AcuI | CTGAAG | 3 cut(s) | 714, 779, 1167 |
| AfaI | GTAC | 4 cut(s) | 47, 891, 1327, 1378 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 495, 496, 497, 632, 695 |
| AflII | CTTAAG | 1 cut(s) | 551 |
| AgsI | TTSAA | 8 cut(s) | 251, 323, 509, 880, 1021, 1231, 1469, 1595 |
| AhlI | ACTAGT | 1 cut(s) | 434 |
| AjnI | CCWGG | 2 cut(s) | 857, 1234 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1595, 1627 |
| AluBI | AGCT | 8 cut(s) | 354, 748, 771, 1157, 1177, 1413, 1464, 1552 |
| AluI | AGCT | 8 cut(s) | 354, 748, 771, 1157, 1177, 1413, 1464, 1552 |
| Alw21I | GWGCWC | 2 cut(s) | 356, 708 |
| Alw26I | GTCTC | 4 cut(s) | 11, 269, 586, 842 |
| AlwI | GGATC | 6 cut(s) | 153, 651, 1538, 1551, 1611, 1616 |
| AoxI | GGCC | 4 cut(s) | 439, 547, 1390, 1497 |
| ApeKI | GCWGC | 5 cut(s) | 155, 407, 622, 1446, 1552 |
| ApoI | RAATTY | 2 cut(s) | 523, 1342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1297, 1329 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 375 |
| AspA2I | CCTAGG | 2 cut(s) | 188, 494 |
| AspS9I | GGNCC | 3 cut(s) | 193, 1391, 1498 |
| AsuHPI | GGTGA | 5 cut(s) | 425, 551, 680, 857, 1552 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| AvrII | CCTAGG | 2 cut(s) | 188, 494 |
| BaeGI | GKGCMC | 3 cut(s) | 638, 967, 993 |
| BalI | TGGCCA | 1 cut(s) | 441 |
| BamHI | GGATCC | 1 cut(s) | 1543 |
| BanII | GRGCYC | 1 cut(s) | 356 |
| BbsI | GAAGAC | 2 cut(s) | 465, 785 |
| Bbv12I | GWGCWC | 2 cut(s) | 356, 708 |
| BbvI | GCAGC | 5 cut(s) | 142, 419, 634, 1433, 1539 |
| BceAI | ACGGC | 1 cut(s) | 872 |
| BciT130I | CCWGG | 2 cut(s) | 859, 1236 |
| BclI | TGATCA | 1 cut(s) | 1639 |
| BcoDI | GTCTC | 4 cut(s) | 11, 269, 586, 842 |
| BcuI | ACTAGT | 1 cut(s) | 434 |
| BfaI | CTAG | 3 cut(s) | 189, 435, 495 |
| BfmI | CTRYAG | 3 cut(s) | 802, 968, 1408 |
| BfrI | CTTAAG | 1 cut(s) | 551 |
| BfuAI | ACCTGC | 1 cut(s) | 401 |
| BglII | AGATCT | 1 cut(s) | 1516 |
| BisI | GCNGC | 6 cut(s) | 156, 258, 408, 623, 1447, 1553 |
| BlnI | CCTAGG | 2 cut(s) | 188, 494 |
| BlsI | GCNGC | 6 cut(s) | 157, 259, 409, 624, 1448, 1554 |
| Bme1390I | CCNGG | 2 cut(s) | 859, 1236 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 3 cut(s) | 193, 1391, 1498 |
| BmiI | GGNNCC | 6 cut(s) | 194, 303, 487, 819, 1500, 1545 |
| BmrFI | CCNGG | 2 cut(s) | 859, 1236 |
| BmsI | GCATC | 2 cut(s) | 24, 1498 |
| BpiI | GAAGAC | 2 cut(s) | 465, 785 |
| BpmI | CTGGAG | 1 cut(s) | 782 |
| BpuEI | CTTGAG | 3 cut(s) | 370, 401, 1341 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1116 |
| BsaJI | CCNNGG | 6 cut(s) | 6, 188, 357, 494, 858, 912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 338, 368 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 495, 496, 497, 632, 695 |
| Bse118I | RCCGGY | 1 cut(s) | 724 |
| Bse1I | ACTGG | 3 cut(s) | 478, 765, 907 |
| Bse3DI | GCAATG | 1 cut(s) | 525 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1116 |
| BseBI | CCWGG | 2 cut(s) | 859, 1236 |
| BseDI | CCNNGG | 6 cut(s) | 6, 188, 357, 494, 858, 912 |
| BseGI | GGATG | 5 cut(s) | 271, 349, 776, 1098, 1258 |
| BseJI | GATNNNNATC | 1 cut(s) | 1116 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 495, 496, 497, 632, 695 |
| BseMI | GCAATG | 1 cut(s) | 525 |
| BseMII | CTCAG | 3 cut(s) | 12, 242, 444 |
| BseNI | ACTGG | 3 cut(s) | 478, 765, 907 |
| BseRI | GAGGAG | 4 cut(s) | 314, 346, 398, 1146 |
| BseSI | GKGCMC | 3 cut(s) | 638, 967, 993 |
| BseXI | GCAGC | 5 cut(s) | 142, 419, 634, 1433, 1539 |
| BseYI | CCCAGC | 1 cut(s) | 1501 |
| BshFI | GGCC | 4 cut(s) | 441, 549, 1392, 1499 |
| BsiHKAI | GWGCWC | 2 cut(s) | 356, 708 |
| BsiSI | CCGG | 1 cut(s) | 725 |
| BslFI | GGGAC | 2 cut(s) | 731, 1150 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 495, 496, 497, 632, 695 |
| BsmAI | GTCTC | 4 cut(s) | 11, 269, 586, 842 |
| BsmFI | GGGAC | 2 cut(s) | 731, 1150 |
| BsnI | GGCC | 4 cut(s) | 441, 549, 1392, 1499 |
| Bsp1286I | GDGCHC | 5 cut(s) | 356, 638, 708, 967, 993 |
| Bsp143I | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspACI | CCGC | 4 cut(s) | 257, 654, 1171, 1335 |
| BspANI | GGCC | 4 cut(s) | 441, 549, 1392, 1499 |
| BspCNI | CTCAG | 3 cut(s) | 13, 241, 445 |
| BspLI | GGNNCC | 6 cut(s) | 194, 303, 487, 819, 1500, 1545 |
| BspMI | ACCTGC | 1 cut(s) | 401 |
| BspPI | GGATC | 6 cut(s) | 153, 651, 1538, 1551, 1611, 1616 |
| BspTI | CTTAAG | 1 cut(s) | 551 |
| BsrDI | GCAATG | 1 cut(s) | 525 |
| BsrFI | RCCGGY | 1 cut(s) | 724 |
| BsrI | ACTGG | 3 cut(s) | 478, 765, 907 |
| BssAI | RCCGGY | 1 cut(s) | 724 |
| BssECI | CCNNGG | 6 cut(s) | 6, 188, 357, 494, 858, 912 |
| BssMI | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| BssT1I | CCWWGG | 3 cut(s) | 6, 188, 494 |
| Bst2UI | CCWGG | 2 cut(s) | 859, 1236 |
| Bst4CI | ACNGT | 6 cut(s) | 172, 244, 640, 853, 913, 1388 |
| Bst6I | CTCTTC | 3 cut(s) | 246, 624, 977 |
| BstAFI | CTTAAG | 1 cut(s) | 551 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 3 cut(s) | 516, 1159, 1175 |
| BstDEI | CTNAG | 3 cut(s) | 21, 228, 453 |
| BstDSI | CCRYGG | 2 cut(s) | 6, 912 |
| BstF5I | GGATG | 5 cut(s) | 271, 349, 776, 1098, 1258 |
| BstKTI | GATC | 7 cut(s) | 148, 646, 1519, 1546, 1606, 1624, 1642 |
| BstMAI | GTCTC | 4 cut(s) | 11, 269, 586, 842 |
| BstMBI | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 91, 233, 740, 863, 1021 |
| BstNI | CCWGG | 2 cut(s) | 859, 1236 |
| BstNSI | RCATGY | 1 cut(s) | 155 |
| BstSCI | CCNGG | 2 cut(s) | 857, 1234 |
| BstSFI | CTRYAG | 3 cut(s) | 802, 968, 1408 |
| BstSLI | GKGCMC | 3 cut(s) | 638, 967, 993 |
| BstV1I | GCAGC | 5 cut(s) | 142, 419, 634, 1433, 1539 |
| BstV2I | GAAGAC | 2 cut(s) | 465, 785 |
| BstX2I | RGATCY | 2 cut(s) | 1516, 1543 |
| BstYI | RGATCY | 2 cut(s) | 1516, 1543 |
| BsuRI | GGCC | 4 cut(s) | 441, 549, 1392, 1499 |
| BtgI | CCRYGG | 2 cut(s) | 6, 912 |
| BtsCI | GGATG | 5 cut(s) | 271, 349, 776, 1098, 1258 |
| BtsIMutI | CAGTG | 5 cut(s) | 450, 636, 708, 1393, 1654 |
| BveI | ACCTGC | 1 cut(s) | 401 |
| Cac8I | GCNNGC | 3 cut(s) | 516, 1159, 1175 |
| Cfr10I | RCCGGY | 1 cut(s) | 724 |
| Cfr13I | GGNCC | 3 cut(s) | 193, 1391, 1498 |
| CseI | GACGC | 1 cut(s) | 26 |
| Csp6I | GTAC | 4 cut(s) | 46, 890, 1326, 1377 |
| CviAII | CATG | 8 cut(s) | 7, 86, 152, 443, 814, 959, 1184, 1628 |
| CviQI | GTAC | 4 cut(s) | 46, 890, 1326, 1377 |
| DdeI | CTNAG | 3 cut(s) | 21, 228, 453 |
| DpnI | GATC | 7 cut(s) | 147, 645, 1518, 1545, 1605, 1623, 1641 |
| DpnII | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| DraI | TTTAAA | 1 cut(s) | 937 |
| EaeI | YGGCCR | 1 cut(s) | 439 |
| Eam1104I | CTCTTC | 3 cut(s) | 246, 624, 977 |
| EarI | CTCTTC | 3 cut(s) | 246, 624, 977 |
| EciI | GGCGGA | 1 cut(s) | 1160 |
| Ecl136II | GAGCTC | 1 cut(s) | 354 |
| Eco130I | CCWWGG | 3 cut(s) | 6, 188, 494 |
| Eco147I | AGGCCT | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 356 |
| Eco32I | GATATC | 1 cut(s) | 1405 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco53kI | GAGCTC | 1 cut(s) | 354 |
| Eco57I | CTGAAG | 3 cut(s) | 714, 779, 1167 |
| EcoICRI | GAGCTC | 1 cut(s) | 354 |
| EcoRI | GAATTC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 2 cut(s) | 857, 1234 |
| EcoRV | GATATC | 1 cut(s) | 1405 |
| EcoT14I | CCWWGG | 3 cut(s) | 6, 188, 494 |
| EcoT38I | GRGCYC | 1 cut(s) | 356 |
| ErhI | CCWWGG | 3 cut(s) | 6, 188, 494 |
| FaeI | CATG | 8 cut(s) | 10, 89, 155, 446, 817, 962, 1187, 1631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 732, 764 |
| FaqI | GGGAC | 2 cut(s) | 731, 1150 |
| FatI | CATG | 8 cut(s) | 6, 85, 151, 442, 813, 958, 1183, 1627 |
| FauI | CCCGC | 1 cut(s) | 661 |
| FbaI | TGATCA | 1 cut(s) | 1639 |
| Fnu4HI | GCNGC | 6 cut(s) | 156, 258, 408, 623, 1447, 1553 |
| FokI | GGATG | 5 cut(s) | 278, 356, 763, 1105, 1265 |
| FriOI | GRGCYC | 1 cut(s) | 356 |
| Fsp4HI | GCNGC | 6 cut(s) | 156, 258, 408, 623, 1447, 1553 |
| FspBI | CTAG | 3 cut(s) | 189, 435, 495 |
| GluI | GCNGC | 6 cut(s) | 156, 258, 408, 623, 1447, 1553 |
| GsaI | CCCAGC | 1 cut(s) | 1505 |
| GsuI | CTGGAG | 1 cut(s) | 782 |
| HaeIII | GGCC | 4 cut(s) | 441, 549, 1392, 1499 |
| HapII | CCGG | 1 cut(s) | 725 |
| HgaI | GACGC | 1 cut(s) | 26 |
| Hin1II | CATG | 8 cut(s) | 10, 89, 155, 446, 817, 962, 1187, 1631 |
| HincII | GTYRAC | 1 cut(s) | 420 |
| HindII | GTYRAC | 1 cut(s) | 420 |
| HindIII | AAGCTT | 1 cut(s) | 769 |
| HinfI | GANTC | 4 cut(s) | 182, 594, 1216, 1479 |
| HpaII | CCGG | 1 cut(s) | 725 |
| HphI | GGTGA | 5 cut(s) | 425, 551, 680, 857, 1552 |
| Hpy166II | GTNNAC | 2 cut(s) | 420, 450 |
| Hpy188I | TCNGA | 8 cut(s) | 76, 168, 205, 361, 1272, 1305, 1568, 1639 |
| Hpy188III | TCNNGA | 6 cut(s) | 41, 380, 398, 1223, 1358, 1576 |
| Hpy8I | GTNNAC | 2 cut(s) | 420, 450 |
| HpyAV | CCTTC | 3 cut(s) | 824, 1062, 1142 |
| HpyCH4III | ACNGT | 6 cut(s) | 172, 244, 640, 853, 913, 1388 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 91, 233, 740, 863, 1021 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 228, 453 |
| Hsp92II | CATG | 8 cut(s) | 10, 89, 155, 446, 817, 962, 1187, 1631 |
| Ksp22I | TGATCA | 1 cut(s) | 1639 |
| Kzo9I | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| LmnI | GCTCC | 6 cut(s) | 163, 301, 359, 385, 823, 1461 |
| Lsp1109I | GCAGC | 5 cut(s) | 142, 419, 634, 1433, 1539 |
| LweI | GCATC | 2 cut(s) | 24, 1498 |
| MaeI | CTAG | 3 cut(s) | 189, 435, 495 |
| MaeIII | GTNAC | 5 cut(s) | 67, 136, 647, 833, 1420 |
| MalI | GATC | 7 cut(s) | 147, 645, 1518, 1545, 1605, 1623, 1641 |
| MboI | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| MboII | GAAGA | 8 cut(s) | 192, 263, 470, 641, 785, 819, 892, 994 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MflI | RGATCY | 2 cut(s) | 1516, 1543 |
| MhlI | GDGCHC | 5 cut(s) | 356, 638, 708, 967, 993 |
| MlsI | TGGCCA | 1 cut(s) | 441 |
| MluNI | TGGCCA | 1 cut(s) | 441 |
| MlyI | GAGTC | 3 cut(s) | 176, 588, 1473 |
| MmeI | TCCRAC | 1 cut(s) | 185 |
| Mox20I | TGGCCA | 1 cut(s) | 441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 375 |
| MscI | TGGCCA | 1 cut(s) | 441 |
| MseI | TTAA | 7 cut(s) | 552, 936, 954, 978, 1142, 1322, 1616 |
| Msp20I | TGGCCA | 1 cut(s) | 441 |
| MspA1I | CMGCKG | 1 cut(s) | 1413 |
| MspCI | CTTAAG | 1 cut(s) | 551 |
| MspI | CCGG | 1 cut(s) | 725 |
| MspR9I | CCNGG | 2 cut(s) | 859, 1236 |
| MunI | CAATTG | 1 cut(s) | 690 |
| MvaI | CCWGG | 2 cut(s) | 859, 1236 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 91, 233, 740, 863, 1021 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NdeII | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| NlaIII | CATG | 8 cut(s) | 10, 89, 155, 446, 817, 962, 1187, 1631 |
| NlaIV | GGNNCC | 6 cut(s) | 194, 303, 487, 819, 1500, 1545 |
| NmuCI | GTSAC | 1 cut(s) | 67 |
| NspI | RCATGY | 1 cut(s) | 155 |
| PaqCI | CACCTGC | 1 cut(s) | 401 |
| PceI | AGGCCT | 1 cut(s) | 549 |
| PdmI | GAANNNNTTC | 1 cut(s) | 375 |
| PfeI | GAWTC | 1 cut(s) | 1216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 695 |
| PkrI | GCNGC | 6 cut(s) | 157, 259, 409, 624, 1448, 1554 |
| PleI | GAGTC | 3 cut(s) | 176, 588, 1473 |
| PpsI | GAGTC | 3 cut(s) | 176, 588, 1473 |
| Psp124BI | GAGCTC | 1 cut(s) | 356 |
| Psp6I | CCWGG | 2 cut(s) | 857, 1234 |
| PspFI | CCCAGC | 1 cut(s) | 1501 |
| PspGI | CCWGG | 2 cut(s) | 857, 1234 |
| PspN4I | GGNNCC | 6 cut(s) | 194, 303, 487, 819, 1500, 1545 |
| PspPI | GGNCC | 3 cut(s) | 193, 1391, 1498 |
| PsuI | RGATCY | 2 cut(s) | 1516, 1543 |
| PvuII | CAGCTG | 1 cut(s) | 1413 |
| RsaI | GTAC | 4 cut(s) | 47, 891, 1327, 1378 |
| RsaNI | GTAC | 4 cut(s) | 46, 890, 1326, 1377 |
| SacI | GAGCTC | 1 cut(s) | 356 |
| SaqAI | TTAA | 7 cut(s) | 552, 936, 954, 978, 1142, 1322, 1616 |
| SatI | GCNGC | 6 cut(s) | 156, 258, 408, 623, 1447, 1553 |
| Sau3AI | GATC | 7 cut(s) | 145, 643, 1516, 1543, 1603, 1621, 1639 |
| Sau96I | GGNCC | 3 cut(s) | 193, 1391, 1498 |
| SchI | GAGTC | 3 cut(s) | 176, 588, 1473 |
| ScrFI | CCNGG | 2 cut(s) | 859, 1236 |
| SduI | GDGCHC | 5 cut(s) | 356, 638, 708, 967, 993 |
| SfaNI | GCATC | 2 cut(s) | 24, 1498 |
| SfcI | CTRYAG | 3 cut(s) | 802, 968, 1408 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmlI | CTYRAG | 4 cut(s) | 349, 380, 551, 1356 |
| SmoI | CTYRAG | 4 cut(s) | 349, 380, 551, 1356 |
| SpeI | ACTAGT | 1 cut(s) | 434 |
| SseBI | AGGCCT | 1 cut(s) | 549 |
| SsiI | CCGC | 4 cut(s) | 257, 654, 1171, 1335 |
| SspI | AATATT | 3 cut(s) | 319, 927, 1033 |
| SspMI | CTAG | 3 cut(s) | 189, 435, 495 |
| SstI | GAGCTC | 1 cut(s) | 356 |
| StuI | AGGCCT | 1 cut(s) | 549 |
| StyD4I | CCNGG | 2 cut(s) | 857, 1234 |
| StyI | CCWWGG | 3 cut(s) | 6, 188, 494 |
| TaaI | ACNGT | 6 cut(s) | 172, 244, 640, 853, 913, 1388 |
| TatI | WGTACW | 1 cut(s) | 45 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TfiI | GAWTC | 1 cut(s) | 1216 |
| Tru1I | TTAA | 7 cut(s) | 552, 936, 954, 978, 1142, 1322, 1616 |
| Tru9I | TTAA | 7 cut(s) | 552, 936, 954, 978, 1142, 1322, 1616 |
| TscAI | CASTG | 5 cut(s) | 457, 643, 715, 1393, 1654 |
| TseFI | GTSAC | 1 cut(s) | 67 |
| TseI | GCWGC | 5 cut(s) | 155, 407, 622, 1446, 1552 |
| Tsp45I | GTSAC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 6 cut(s) | 144, 282, 536, 1172, 1208, 1269 |
| TspGWI | ACGGA | 2 cut(s) | 1474, 1550 |
| TspRI | CASTG | 5 cut(s) | 457, 643, 715, 1393, 1654 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 695 |
| Vha464I | CTTAAG | 1 cut(s) | 551 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XapI | RAATTY | 2 cut(s) | 523, 1342 |
| XceI | RCATGY | 1 cut(s) | 155 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 470, 1181 |
| XmaJI | CCTAGG | 2 cut(s) | 188, 494 |
| XmnI | GAANNNNTTC | 1 cut(s) | 375 |
| XspI | CTAG | 3 cut(s) | 189, 435, 495 |