Rh2BG556000

RIO1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
76584558 .. 76602845
18288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG556000.1

Sequence Viewer

Length: 1656 bp
ATGTCCATGGACAAGGAGACTGAGGAAATAAAGATGCGTCAAGAGTACAGGGTAAAGCGTAATGTGGTCACTTCTGATATTAGGCATGATATGCAGATGGTCTATGCTTCTCCACCAAATATGACTAATGAAATTGTTACAAAGGATCAACATGCTGCTCCAACTCTGACAGTTGATGACGACTCTCCTAGGGTCCAATCTTCTGAAAGGGAATTGGTAGAAATTGCTCAGTTTGCACAAACTGTTATTGAAGAGGCGGCTTTGGATGAAATGGAGACTATTGCCCAACGAGTAATAGAGGAGCCATTGGAAGCAAATATTGAAGTTGCTAATGCAAGGCAGGATGACTTGAGCTCCTCGGAAACTACTGAACAAGTTCTTGAGGAGCATTTTTCTCTGGAAAATGCAGCAGGTGAGTTGACGAAAGGGAAAACTAGTGGCCATGAGTTCACTGAGGAAGACCAATGCACAACTGGTATTGATGGAACCCCTCCTAGGGGGCAATTTGAAATGCAAGCAATGAATTCTATGATGGGGGGTGATACAGGCCTTAAGAATATGACCCTTGTTCTTTCTAAAGGGCAGAAAAAGAGACTCTGCAAACAGCAAAGAGAGGACAAGCAGCCAGAAGAGGGCACTGTGGATCGTTACCCCGCAAGAAATAGGGGTGATTTTCTTTCTCTTGTTCCAATTGATGGTGTGGTGCTCACTGAAAGGGACAGACCGGCTTCAGCAATCAAAGCACAGCTTCACACAAAACTGGAGGTAAGCTTCACATCCTCTGGCAAAAGTCTTCAGCACTATAGAAGAAACATGGCTCCAAAATTGGAAGGTTACGAGTTTGGTGAGACAGTTGCCAGGGGTGCTTGTGCCAAGTTGAAGAAAGCCGTACATATTGCAACTGGACAGACCGTGGCTGTCAAAATATTATCTTTTAAAGGATTTGCAAAAGTTAATCATGGGGCACTACAGAAGTTTAAGAAGAGAGGGCACAGAGAGATGTTTGTGGCAAAGCATTTGAAGCACCCAAATATTATGACTTGCTATATGGGGCAGATGTATAAAAGAAGGGCATATATTGTGATGGAATGGATGGAGGGTGGGAGTTTAGATGACTATCTTACAGAAAGAGGAGGGACATTAACTGAAGGGGAAGCTCGCAGATACTTCCGCCAGCTCATTCATGGTGTTGAGTATTGCCATAAACTCCTTTTGATTCATCGGGATTTGAAACCTGGAAATCTACTCTTGGATGAAACCAAAGAACATCTGAAAATAGCAGACTTTGGAATAAGCAATTATCTGACTGCTGATTTGACATTAAGTACCTATTGCGGAACAAATTTATATCAGGCTCAAGAGATAAGCAAAGATGGTACAAATTACAGTGGCCCAGAGGTTGATATCTACAGCTGTGGTGTAACACTTTACCACCTCTTATTCGGCTGCCCATCACTACGGAGCTTTCAATATGGCAGACTCTCTATTCCTCTGTCGGCCCCAGCAGATGCAAGAGATCTAATAAGTAGAATGACGGAATGGGATCCAAAGCTGCGTATCACCATCGGAGAAATCAAGAACCATAGATGGTTTCAAGGTGGGGATCAAATGTTCTTAAATGATCCTCATGGCATTTCTGATCAGGTCAGTGCATAG

Protein Analysis

551

Amino Acids

62.18

Weight (kDa)

6.02

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 279 - 531 4.1e-55 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 281 - 481 1.2e-25 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 353 - 438 2.1e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 695
AciI CCGC 4 cut(s) 257, 654, 1171, 1335
AclWI GGATC 6 cut(s) 153, 651, 1538, 1551, 1611, 1616
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 2 cut(s) 523, 1342
AcuI CTGAAG 3 cut(s) 714, 779, 1167
AfaI GTAC 4 cut(s) 47, 891, 1327, 1378
AfiI CCNNNNNNNGG 5 cut(s) 495, 496, 497, 632, 695
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 8 cut(s) 251, 323, 509, 880, 1021, 1231, 1469, 1595
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 857, 1234
AloI GAACNNNNNNTCC 2 cut(s) 1595, 1627
AluBI AGCT 8 cut(s) 354, 748, 771, 1157, 1177, 1413, 1464, 1552
AluI AGCT 8 cut(s) 354, 748, 771, 1157, 1177, 1413, 1464, 1552
Alw21I GWGCWC 2 cut(s) 356, 708
Alw26I GTCTC 4 cut(s) 11, 269, 586, 842
AlwI GGATC 6 cut(s) 153, 651, 1538, 1551, 1611, 1616
AoxI GGCC 4 cut(s) 439, 547, 1390, 1497
ApeKI GCWGC 5 cut(s) 155, 407, 622, 1446, 1552
ApoI RAATTY 2 cut(s) 523, 1342
ArsI GACNNNNNNTTYG 2 cut(s) 1297, 1329
Asp700I GAANNNNTTC 1 cut(s) 375
AspA2I CCTAGG 2 cut(s) 188, 494
AspS9I GGNCC 3 cut(s) 193, 1391, 1498
AsuHPI GGTGA 5 cut(s) 425, 551, 680, 857, 1552
AvaII GGWCC 1 cut(s) 193
AvrII CCTAGG 2 cut(s) 188, 494
BaeGI GKGCMC 3 cut(s) 638, 967, 993
BalI TGGCCA 1 cut(s) 441
BamHI GGATCC 1 cut(s) 1543
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 465, 785
Bbv12I GWGCWC 2 cut(s) 356, 708
BbvI GCAGC 5 cut(s) 142, 419, 634, 1433, 1539
BceAI ACGGC 1 cut(s) 872
BciT130I CCWGG 2 cut(s) 859, 1236
BclI TGATCA 1 cut(s) 1639
BcoDI GTCTC 4 cut(s) 11, 269, 586, 842
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 3 cut(s) 189, 435, 495
BfmI CTRYAG 3 cut(s) 802, 968, 1408
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 401
BglII AGATCT 1 cut(s) 1516
BisI GCNGC 6 cut(s) 156, 258, 408, 623, 1447, 1553
BlnI CCTAGG 2 cut(s) 188, 494
BlsI GCNGC 6 cut(s) 157, 259, 409, 624, 1448, 1554
Bme1390I CCNGG 2 cut(s) 859, 1236
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 193, 1391, 1498
BmiI GGNNCC 6 cut(s) 194, 303, 487, 819, 1500, 1545
BmrFI CCNGG 2 cut(s) 859, 1236
BmsI GCATC 2 cut(s) 24, 1498
BpiI GAAGAC 2 cut(s) 465, 785
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 3 cut(s) 370, 401, 1341
BsaBI GATNNNNATC 1 cut(s) 1116
BsaJI CCNNGG 6 cut(s) 6, 188, 357, 494, 858, 912
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 5 cut(s) 495, 496, 497, 632, 695
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 3 cut(s) 478, 765, 907
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 1116
BseBI CCWGG 2 cut(s) 859, 1236
BseDI CCNNGG 6 cut(s) 6, 188, 357, 494, 858, 912
BseGI GGATG 5 cut(s) 271, 349, 776, 1098, 1258
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 5 cut(s) 495, 496, 497, 632, 695
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 12, 242, 444
BseNI ACTGG 3 cut(s) 478, 765, 907
BseRI GAGGAG 4 cut(s) 314, 346, 398, 1146
BseSI GKGCMC 3 cut(s) 638, 967, 993
BseXI GCAGC 5 cut(s) 142, 419, 634, 1433, 1539
BseYI CCCAGC 1 cut(s) 1501
BshFI GGCC 4 cut(s) 441, 549, 1392, 1499
BsiHKAI GWGCWC 2 cut(s) 356, 708
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 2 cut(s) 731, 1150
BslI CCNNNNNNNGG 5 cut(s) 495, 496, 497, 632, 695
BsmAI GTCTC 4 cut(s) 11, 269, 586, 842
BsmFI GGGAC 2 cut(s) 731, 1150
BsnI GGCC 4 cut(s) 441, 549, 1392, 1499
Bsp1286I GDGCHC 5 cut(s) 356, 638, 708, 967, 993
Bsp143I GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 257, 654, 1171, 1335
BspANI GGCC 4 cut(s) 441, 549, 1392, 1499
BspCNI CTCAG 3 cut(s) 13, 241, 445
BspLI GGNNCC 6 cut(s) 194, 303, 487, 819, 1500, 1545
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 6 cut(s) 153, 651, 1538, 1551, 1611, 1616
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 3 cut(s) 478, 765, 907
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 6 cut(s) 6, 188, 357, 494, 858, 912
BssMI GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
BssT1I CCWWGG 3 cut(s) 6, 188, 494
Bst2UI CCWGG 2 cut(s) 859, 1236
Bst4CI ACNGT 6 cut(s) 172, 244, 640, 853, 913, 1388
Bst6I CTCTTC 3 cut(s) 246, 624, 977
BstAFI CTTAAG 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 516, 1159, 1175
BstDEI CTNAG 3 cut(s) 21, 228, 453
BstDSI CCRYGG 2 cut(s) 6, 912
BstF5I GGATG 5 cut(s) 271, 349, 776, 1098, 1258
BstKTI GATC 7 cut(s) 148, 646, 1519, 1546, 1606, 1624, 1642
BstMAI GTCTC 4 cut(s) 11, 269, 586, 842
BstMBI GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
BstMWI GCNNNNNNNGC 5 cut(s) 91, 233, 740, 863, 1021
BstNI CCWGG 2 cut(s) 859, 1236
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 857, 1234
BstSFI CTRYAG 3 cut(s) 802, 968, 1408
BstSLI GKGCMC 3 cut(s) 638, 967, 993
BstV1I GCAGC 5 cut(s) 142, 419, 634, 1433, 1539
BstV2I GAAGAC 2 cut(s) 465, 785
BstX2I RGATCY 2 cut(s) 1516, 1543
BstYI RGATCY 2 cut(s) 1516, 1543
BsuRI GGCC 4 cut(s) 441, 549, 1392, 1499
BtgI CCRYGG 2 cut(s) 6, 912
BtsCI GGATG 5 cut(s) 271, 349, 776, 1098, 1258
BtsIMutI CAGTG 5 cut(s) 450, 636, 708, 1393, 1654
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 516, 1159, 1175
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 3 cut(s) 193, 1391, 1498
CseI GACGC 1 cut(s) 26
Csp6I GTAC 4 cut(s) 46, 890, 1326, 1377
CviAII CATG 8 cut(s) 7, 86, 152, 443, 814, 959, 1184, 1628
CviQI GTAC 4 cut(s) 46, 890, 1326, 1377
DdeI CTNAG 3 cut(s) 21, 228, 453
DpnI GATC 7 cut(s) 147, 645, 1518, 1545, 1605, 1623, 1641
DpnII GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
DraI TTTAAA 1 cut(s) 937
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 246, 624, 977
EarI CTCTTC 3 cut(s) 246, 624, 977
EciI GGCGGA 1 cut(s) 1160
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 3 cut(s) 6, 188, 494
Eco147I AGGCCT 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 1405
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 3 cut(s) 714, 779, 1167
EcoICRI GAGCTC 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 857, 1234
EcoRV GATATC 1 cut(s) 1405
EcoT14I CCWWGG 3 cut(s) 6, 188, 494
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 3 cut(s) 6, 188, 494
FaeI CATG 8 cut(s) 10, 89, 155, 446, 817, 962, 1187, 1631
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 2 cut(s) 731, 1150
FatI CATG 8 cut(s) 6, 85, 151, 442, 813, 958, 1183, 1627
FauI CCCGC 1 cut(s) 661
FbaI TGATCA 1 cut(s) 1639
Fnu4HI GCNGC 6 cut(s) 156, 258, 408, 623, 1447, 1553
FokI GGATG 5 cut(s) 278, 356, 763, 1105, 1265
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 6 cut(s) 156, 258, 408, 623, 1447, 1553
FspBI CTAG 3 cut(s) 189, 435, 495
GluI GCNGC 6 cut(s) 156, 258, 408, 623, 1447, 1553
GsaI CCCAGC 1 cut(s) 1505
GsuI CTGGAG 1 cut(s) 782
HaeIII GGCC 4 cut(s) 441, 549, 1392, 1499
HapII CCGG 1 cut(s) 725
HgaI GACGC 1 cut(s) 26
Hin1II CATG 8 cut(s) 10, 89, 155, 446, 817, 962, 1187, 1631
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 4 cut(s) 182, 594, 1216, 1479
HpaII CCGG 1 cut(s) 725
HphI GGTGA 5 cut(s) 425, 551, 680, 857, 1552
Hpy166II GTNNAC 2 cut(s) 420, 450
Hpy188I TCNGA 8 cut(s) 76, 168, 205, 361, 1272, 1305, 1568, 1639
Hpy188III TCNNGA 6 cut(s) 41, 380, 398, 1223, 1358, 1576
Hpy8I GTNNAC 2 cut(s) 420, 450
HpyAV CCTTC 3 cut(s) 824, 1062, 1142
HpyCH4III ACNGT 6 cut(s) 172, 244, 640, 853, 913, 1388
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 233, 740, 863, 1021
HpyF3I CTNAG 3 cut(s) 21, 228, 453
Hsp92II CATG 8 cut(s) 10, 89, 155, 446, 817, 962, 1187, 1631
Ksp22I TGATCA 1 cut(s) 1639
Kzo9I GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
LmnI GCTCC 6 cut(s) 163, 301, 359, 385, 823, 1461
Lsp1109I GCAGC 5 cut(s) 142, 419, 634, 1433, 1539
LweI GCATC 2 cut(s) 24, 1498
MaeI CTAG 3 cut(s) 189, 435, 495
MaeIII GTNAC 5 cut(s) 67, 136, 647, 833, 1420
MalI GATC 7 cut(s) 147, 645, 1518, 1545, 1605, 1623, 1641
MboI GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
MboII GAAGA 8 cut(s) 192, 263, 470, 641, 785, 819, 892, 994
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 2 cut(s) 1516, 1543
MhlI GDGCHC 5 cut(s) 356, 638, 708, 967, 993
MlsI TGGCCA 1 cut(s) 441
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 3 cut(s) 176, 588, 1473
MmeI TCCRAC 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 375
MscI TGGCCA 1 cut(s) 441
MseI TTAA 7 cut(s) 552, 936, 954, 978, 1142, 1322, 1616
Msp20I TGGCCA 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 1413
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 859, 1236
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 2 cut(s) 859, 1236
MwoI GCNNNNNNNGC 5 cut(s) 91, 233, 740, 863, 1021
NcoI CCATGG 1 cut(s) 6
NdeII GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
NlaIII CATG 8 cut(s) 10, 89, 155, 446, 817, 962, 1187, 1631
NlaIV GGNNCC 6 cut(s) 194, 303, 487, 819, 1500, 1545
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 1216
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 6 cut(s) 157, 259, 409, 624, 1448, 1554
PleI GAGTC 3 cut(s) 176, 588, 1473
PpsI GAGTC 3 cut(s) 176, 588, 1473
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 857, 1234
PspFI CCCAGC 1 cut(s) 1501
PspGI CCWGG 2 cut(s) 857, 1234
PspN4I GGNNCC 6 cut(s) 194, 303, 487, 819, 1500, 1545
PspPI GGNCC 3 cut(s) 193, 1391, 1498
PsuI RGATCY 2 cut(s) 1516, 1543
PvuII CAGCTG 1 cut(s) 1413
RsaI GTAC 4 cut(s) 47, 891, 1327, 1378
RsaNI GTAC 4 cut(s) 46, 890, 1326, 1377
SacI GAGCTC 1 cut(s) 356
SaqAI TTAA 7 cut(s) 552, 936, 954, 978, 1142, 1322, 1616
SatI GCNGC 6 cut(s) 156, 258, 408, 623, 1447, 1553
Sau3AI GATC 7 cut(s) 145, 643, 1516, 1543, 1603, 1621, 1639
Sau96I GGNCC 3 cut(s) 193, 1391, 1498
SchI GAGTC 3 cut(s) 176, 588, 1473
ScrFI CCNGG 2 cut(s) 859, 1236
SduI GDGCHC 5 cut(s) 356, 638, 708, 967, 993
SfaNI GCATC 2 cut(s) 24, 1498
SfcI CTRYAG 3 cut(s) 802, 968, 1408
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 4 cut(s) 349, 380, 551, 1356
SmoI CTYRAG 4 cut(s) 349, 380, 551, 1356
SpeI ACTAGT 1 cut(s) 434
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 4 cut(s) 257, 654, 1171, 1335
SspI AATATT 3 cut(s) 319, 927, 1033
SspMI CTAG 3 cut(s) 189, 435, 495
SstI GAGCTC 1 cut(s) 356
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 857, 1234
StyI CCWWGG 3 cut(s) 6, 188, 494
TaaI ACNGT 6 cut(s) 172, 244, 640, 853, 913, 1388
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 1216
Tru1I TTAA 7 cut(s) 552, 936, 954, 978, 1142, 1322, 1616
Tru9I TTAA 7 cut(s) 552, 936, 954, 978, 1142, 1322, 1616
TscAI CASTG 5 cut(s) 457, 643, 715, 1393, 1654
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 155, 407, 622, 1446, 1552
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 6 cut(s) 144, 282, 536, 1172, 1208, 1269
TspGWI ACGGA 2 cut(s) 1474, 1550
TspRI CASTG 5 cut(s) 457, 643, 715, 1393, 1654
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 523, 1342
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 2 cut(s) 470, 1181
XmaJI CCTAGG 2 cut(s) 188, 494
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 3 cut(s) 189, 435, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.