RchiOBHm_Chr2g0167831

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007543
Physical Location & Seq
Forward (+)
82159250 .. 82164197
4948 bp
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UTR
Exon/CDS
Intron
PRQ53559

Sequence Viewer

Length: 474 bp
ATGTACCTGCGTATAGCTTCTGGTCTTCTAGTACCAGAAGCCAAGCTGTTTCTGCATTCGGAGGATTTGCTTTATGTGGATAAAGCCAAACCCCATGATCGCAGGACGATGTGTGACTCACCGATTGTGCAAACTAAGTTGAGCAATCATTTGCAGGTTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACCCCTTGCTTTGGCACTGAAACAGTTCTTGGCAGATTGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGGTACCACTAATTGTGCGTTTTCCCCAGCATGAGTGTCTTCTTGACCGACCTATCAACCAAGAGTTTGGAGACCTTCTGATGAATTTTCTTTATTTTTTTGGGAATGTTTTTGATCCTCGGCAAATGCGTATTTCCGTACAGGGAAGTGGCGTTCATATAAAGAGGGAAAGAGGTTGCAGCATCGACCCCACACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

157

Amino Acids

17.81

Weight (kDa)

6.57

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 15, 145
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 246, 383
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 4 cut(s) 5, 33, 279, 414
AfiI CCNNNNNNNGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
AluBI AGCT 2 cut(s) 17, 46
AluI AGCT 2 cut(s) 17, 46
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 246, 383
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 2 cut(s) 17, 305
BbvI GCAGC 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 29
BfuAI ACCTGC 2 cut(s) 15, 145
BisI GCNGC 2 cut(s) 186, 454
BlsI GCNGC 2 cut(s) 187, 455
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 465
BpiI GAAGAC 2 cut(s) 17, 305
BpuEI CTTGAG 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 97, 238, 388
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 2 cut(s) 15, 145
BspPI GGATC 2 cut(s) 246, 383
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 3 cut(s) 97, 238, 388
Bst4CI ACNGT 2 cut(s) 216, 272
BstDEI CTNAG 2 cut(s) 135, 171
BstKTI GATC 3 cut(s) 100, 241, 391
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 97, 238, 388
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 465
BstV2I GAAGAC 2 cut(s) 17, 305
BstXI CCANNNNNNTGG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 2 cut(s) 15, 145
Csp6I GTAC 4 cut(s) 4, 32, 278, 413
CviAII CATG 2 cut(s) 95, 305
CviJI RGCY 6 cut(s) 17, 41, 46, 86, 185, 258
CviKI_1 RGCY 6 cut(s) 17, 41, 46, 86, 185, 258
CviQI GTAC 4 cut(s) 4, 32, 278, 413
DdeI CTNAG 2 cut(s) 135, 171
DpnI GATC 3 cut(s) 99, 240, 390
DpnII GATC 3 cut(s) 97, 238, 388
Eco31I GGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 98, 308
FaiI YATR 6 cut(s) 14, 75, 96, 306, 432, 434
FatI CATG 2 cut(s) 94, 304
Fnu4HI GCNGC 2 cut(s) 186, 454
Fsp4HI GCNGC 2 cut(s) 186, 454
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 186, 454
GsaI CCCAGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 98, 308
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 61, 354
Hpy188III TCNNGA 2 cut(s) 236, 317
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 216, 272
HpyCH4V TGCA 4 cut(s) 55, 130, 154, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 135, 171
Hsp92II CATG 2 cut(s) 98, 308
KpnI GGTACC 1 cut(s) 281
Kzo9I GATC 3 cut(s) 97, 238, 388
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 113
MalI GATC 3 cut(s) 99, 240, 390
MboI GATC 3 cut(s) 97, 238, 388
MboII GAAGA 2 cut(s) 17, 305
MluCI AATT 2 cut(s) 285, 358
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 55, 402, 432, 440
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 159, 167
Mva1269I GAATGC 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 3 cut(s) 97, 238, 388
NlaIII CATG 2 cut(s) 98, 308
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 187, 455
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 4 cut(s) 5, 33, 279, 414
RsaNI GTAC 4 cut(s) 4, 32, 278, 413
SaqAI TTAA 2 cut(s) 159, 167
SatI GCNGC 2 cut(s) 186, 454
Sau3AI GATC 3 cut(s) 97, 238, 388
SchI GAGTC 1 cut(s) 110
SetI ASST 7 cut(s) 9, 19, 48, 159, 328, 351, 451
SfaNI GCATC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 285, 358
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 216, 272
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 336
TasI AATT 2 cut(s) 285, 358
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 159, 167
Tru9I TTAA 2 cut(s) 159, 167
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 371, 419
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 213
XapI RAATTY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.