Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007543

Physical Location & Seq

Genomic Coordinates Reverse (-)

31790128 .. 31818242

Gene Structure 28115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG283900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGATGAAAAAGGAAAGCCGTAAATGGCGGTTGTTGGGTCTTCCCTTGACTCTTATTGGAGGAGATAAATTCCGGCTAACCACACTGAACTCCTTAGAATCTACAATTGCAAAGCAAAAACGAGAACTAGAAGTCCCACAAACTGGAAAGCCCTCGTTGACTAGACGACTACTACTTGATGAGAAATTGTTGTTTTTAAAAATCAGGCAAATCTCGAACACGATCAGTAAGAGACTCAACAAGCCAAGAACCAACAGAGCCAACCAAAGGACTCCGCAGGACCCTCTTGATGAAGATCCTGTACAGAACATGAATTGCATGGTAATTGATAGTCATTTGGAGGTTGAAGATTTAACTGAGCAGTTTCCAGCCGCTACACCCCTTGCTTTGGTACTGAAAAAGTTCTTGGCAGATTGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGAGTTGCAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

159

Amino Acids

18.04

Weight (kDa)

9.39

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316831 RchiOBHm_Chr2g0167831 RchiOBHm_Chr2g0167841 RchiOBHm_Chr5g0049311 RchiOBHm_Chr5g0049321 RchiOBHm_Chr7g0229001
rosa_laevigata	RLG00000030641
rosa_multiflora	Rmu_sc0006695.1_g000030 Rmu_sc0006695.1_g000031 Rmu_ssc0000059.1_g000008
rosa_roxburghii	Rroxscaffold_7G00194280
rosa_rugosa	Rorug02G0058500 Rorug02G0175900 Rorug03G0198300 Rorug04G0115200
rosa_samantha	Rh1AG024200 Rh1AG198900 Rh1BG003300 Rh1CG011000 Rh1DG021200 Rh2BG611900 Rh2CG283900 Rh5BG335100 Rh5DG347400
rosa_wichuraiana	Rw1G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AciI	CCGC	3 cut(s)	31, 278, 375
AclWI	GGATC	2 cut(s)	293, 435
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	306, 396
AfiI	CCNNNNNNNGG	3 cut(s)	146, 270, 391
AgsI	TTSAA	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	293, 435
ApoI	RAATTY	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
BbsI	GAAGAC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	131, 165
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 270, 391
Bse1I	ACTGG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	146, 270, 391
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	146, 270, 391
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	225, 298, 427
BspACI	CCGC	3 cut(s)	31, 278, 375
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	293, 435
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	225, 298, 427
Bst4CI	ACNGT	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	97, 360
BstKTI	GATC	3 cut(s)	228, 301, 430
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	3 cut(s)	225, 298, 427
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	305, 395
CviAII	CATG	2 cut(s)	313, 322
CviJI	RGCY	7 cut(s)	21, 79, 154, 247, 263, 374, 447
CviKI_1	RGCY	7 cut(s)	21, 79, 154, 247, 263, 374, 447
CviQI	GTAC	2 cut(s)	305, 395
DdeI	CTNAG	2 cut(s)	97, 360
DpnI	GATC	3 cut(s)	227, 300, 429
DpnII	GATC	3 cut(s)	225, 298, 427
DraI	TTTAAA	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	283
FaeI	CATG	2 cut(s)	316, 325
FaiI	YATR	3 cut(s)	314, 323, 478
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	312, 321
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	2 cut(s)	131, 165
GluI	GCNGC	1 cut(s)	375
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	2 cut(s)	316, 325
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	52, 101, 237, 274
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	217, 290, 425
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4V	TGCA	3 cut(s)	113, 321, 471
HpyF3I	CTNAG	2 cut(s)	97, 360
Hsp92II	CATG	2 cut(s)	316, 325
Kzo9I	GATC	3 cut(s)	225, 298, 427
LpnPI	CCDG	8 cut(s)	89, 132, 193, 266, 315, 384, 410, 426
MaeI	CTAG	2 cut(s)	131, 165
MalI	GATC	3 cut(s)	227, 300, 429
MboI	GATC	3 cut(s)	225, 298, 427
MboII	GAAGA	4 cut(s)	16, 35, 308, 362
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	5 cut(s)	71, 108, 188, 316, 327
MlyI	GAGTC	3 cut(s)	46, 231, 268
MnlI	CCTC	4 cut(s)	56, 166, 297, 337
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	2 cut(s)	200, 356
MspI	CCGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	108
NdeII	GATC	3 cut(s)	225, 298, 427
NlaIII	CATG	2 cut(s)	316, 325
NlaIV	GGNNCC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	3 cut(s)	46, 231, 268
PpsI	GAGTC	3 cut(s)	46, 231, 268
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	2 cut(s)	306, 396
RsaNI	GTAC	2 cut(s)	305, 395
SaqAI	TTAA	2 cut(s)	200, 356
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	225, 298, 427
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	3 cut(s)	46, 231, 268
SetI	ASST	1 cut(s)	348
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	5 cut(s)	71, 108, 188, 316, 327
SsiI	CCGC	3 cut(s)	31, 278, 375
SspMI	CTAG	2 cut(s)	131, 165
TaaI	ACNGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	218
TasI	AATT	5 cut(s)	71, 108, 188, 316, 327
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	200, 356
Tru9I	TTAA	2 cut(s)	200, 356
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	4 cut(s)	17, 23, 309, 329
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	131, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.