Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007543

Physical Location & Seq

Genomic Coordinates Reverse (-)

4304197 .. 4324916

Gene Structure 20720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGGAATTTGTTCTACTGTACGTGGCCGAGGGTCATGATGTGGTGCATGTTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACCCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAATTCCTACTGTTTGGTACCACTAATTGTGCGTTTTCCCCAGCATGAGTGTCTTCTTGGCCTACCTATGAACCAATGGGTGCAATTTCCTTTGAATCCGTTTCAAGGATGGGGAGGTTTGGCACCGCTGGGCTTCCTAGTGATGTTGTTGAAGTTGGAGAAATGTCTTTCCATCTTCATAATATTGGGAAAAGGCTCAGCTGCTTTAGCTGATTTGGGTGAGGCTGAAGAGAAAGAACATGTTGATGATTTGAAGTTCAAGGATTTGGCTGCCAAAATTGCAGGTCGGATTTTGTTTTTCATGATTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

5.27

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316831 RchiOBHm_Chr2g0167831 RchiOBHm_Chr2g0167841 RchiOBHm_Chr5g0049311 RchiOBHm_Chr5g0049321 RchiOBHm_Chr7g0229001
rosa_laevigata	RLG00000030641
rosa_multiflora	Rmu_sc0006695.1_g000030 Rmu_sc0006695.1_g000031 Rmu_ssc0000059.1_g000008
rosa_roxburghii	Rroxscaffold_7G00194280
rosa_rugosa	Rorug02G0058500 Rorug02G0175900 Rorug03G0198300 Rorug04G0115200
rosa_samantha	Rh1AG024200 Rh1AG198900 Rh1BG003300 Rh1CG011000 Rh1DG021200 Rh2BG611900 Rh2CG283900 Rh5BG335100 Rh5DG347400
rosa_wichuraiana	Rw1G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	2 cut(s)	172, 277
AciI	CCGC	2 cut(s)	81, 281
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	8, 157
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	23, 102, 174
AfiI	CCNNNNNNNGG	2 cut(s)	97, 260
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	6 cut(s)	157, 250, 260, 307, 409, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	2 cut(s)	356, 365
AluI	AGCT	2 cut(s)	356, 365
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	27, 214
ApeKI	GCWGC	2 cut(s)	356, 425
ApoI	RAATTY	2 cut(s)	8, 157
Asp700I	GAANNNNTTC	2 cut(s)	12, 110
Asp718I	GGTACC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	386
BanI	GGYRCC	2 cut(s)	172, 277
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	343, 412
BccI	CCATC	2 cut(s)	258, 335
BfaI	CTAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	81, 357, 426
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	82, 358, 427
BmiI	GGNNCC	2 cut(s)	174, 279
BpiI	GAAGAC	1 cut(s)	200
Bpu1102I	GCTNAGC	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 260
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	97, 260
BseMII	CTCAG	2 cut(s)	57, 366
BseXI	GCAGC	2 cut(s)	343, 412
BseYI	CCCAGC	2 cut(s)	195, 283
BshFI	GGCC	2 cut(s)	29, 216
BshNI	GGYRCC	2 cut(s)	172, 277
BslI	CCNNNNNNNGG	2 cut(s)	97, 260
BsnI	GGCC	2 cut(s)	29, 216
Bsp143I	GATC	2 cut(s)	121, 133
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	81, 281
BspANI	GGCC	2 cut(s)	29, 216
BspCNI	CTCAG	2 cut(s)	58, 365
BspHI	TCATGA	2 cut(s)	37, 456
BspLI	GGNNCC	2 cut(s)	174, 279
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	141
BspT107I	GGYRCC	2 cut(s)	172, 277
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	121, 133
Bst4CI	ACNGT	3 cut(s)	21, 111, 167
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	66, 352
BstF5I	GGATG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	124, 136
BstMBI	GATC	2 cut(s)	121, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 434
BstNSI	RCATGY	2 cut(s)	53, 398
BstV1I	GCAGC	2 cut(s)	343, 412
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	29, 216
BtsCI	GGATG	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	428
CciI	TCATGA	2 cut(s)	37, 456
Csp6I	GTAC	3 cut(s)	22, 101, 173
CviAII	CATG	5 cut(s)	38, 50, 200, 395, 457
CviQI	GTAC	3 cut(s)	22, 101, 173
DdeI	CTNAG	2 cut(s)	66, 352
DpnI	GATC	2 cut(s)	123, 135
DpnII	GATC	2 cut(s)	121, 133
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	157
FaeI	CATG	5 cut(s)	41, 53, 203, 398, 460
FaiI	YATR	7 cut(s)	39, 51, 201, 224, 335, 396, 458
FatI	CATG	5 cut(s)	37, 49, 199, 394, 456
Fnu4HI	GCNGC	3 cut(s)	81, 357, 426
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	81, 357, 426
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	3 cut(s)	81, 357, 426
GsaI	CCCAGC	2 cut(s)	199, 287
HaeIII	GGCC	2 cut(s)	29, 216
Hin1II	CATG	5 cut(s)	41, 53, 203, 398, 460
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	3 cut(s)	38, 131, 457
HpyCH4III	ACNGT	3 cut(s)	21, 111, 167
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	49, 238, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 434
HpyF3I	CTNAG	2 cut(s)	66, 352
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	41, 53, 203, 398, 460
KpnI	GGTACC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	121, 133
LpnPI	CCDG	6 cut(s)	90, 116, 132, 209, 269, 423
Lsp1109I	GCAGC	2 cut(s)	343, 412
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	24
MalI	GATC	2 cut(s)	123, 135
MboI	GATC	2 cut(s)	121, 133
MboII	GAAGA	3 cut(s)	200, 322, 395
MluCI	AATT	5 cut(s)	8, 157, 180, 239, 432
MmeI	TCCRAC	2 cut(s)	291, 422
MnlI	CCTC	3 cut(s)	25, 263, 370
MroXI	GAANNNNTTC	2 cut(s)	12, 110
MseI	TTAA	3 cut(s)	54, 62, 469
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	283, 356
MwoI	GCNNNNNNNGC	2 cut(s)	362, 434
NdeII	GATC	2 cut(s)	121, 133
NlaIII	CATG	5 cut(s)	41, 53, 203, 398, 460
NlaIV	GGNNCC	2 cut(s)	174, 279
NmeAIII	GCCGAG	1 cut(s)	55
NspI	RCATGY	2 cut(s)	53, 398
PagI	TCATGA	2 cut(s)	37, 456
PciI	ACATGT	1 cut(s)	394
PdmI	GAANNNNTTC	2 cut(s)	12, 110
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	82, 358, 427
Ppu21I	YACGTR	1 cut(s)	25
PscI	ACATGT	1 cut(s)	394
PspFI	CCCAGC	2 cut(s)	195, 283
PspN4I	GGNNCC	2 cut(s)	174, 279
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	3 cut(s)	23, 102, 174
RsaNI	GTAC	3 cut(s)	22, 101, 173
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	54, 62, 469
SatI	GCNGC	3 cut(s)	81, 357, 426
Sau3AI	GATC	2 cut(s)	121, 133
SetI	ASST	6 cut(s)	27, 223, 274, 358, 367, 442
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	5 cut(s)	8, 157, 180, 239, 432
SsiI	CCGC	2 cut(s)	81, 281
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	21, 111, 167
TaiI	ACGT	1 cut(s)	27
TasI	AATT	5 cut(s)	8, 157, 180, 239, 432
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	3 cut(s)	54, 62, 469
Tru9I	TTAA	3 cut(s)	54, 62, 469
TseI	GCWGC	2 cut(s)	356, 425
TspDTI	ATGAA	3 cut(s)	239, 322, 445
TspGWI	ACGGA	1 cut(s)	243
XapI	RAATTY	2 cut(s)	8, 157
XceI	RCATGY	2 cut(s)	53, 398
XmnI	GAANNNNTTC	2 cut(s)	12, 110
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.