Rmu_ssc0000059.1_g000008

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000059.1
OG0007543
Physical Location & Seq
Reverse (-)
44703 .. 47562
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000059.1_g000008.1.cds

Sequence Viewer

Length: 408 bp
atgatgtgtgactcaccgattgtgcaaaatagtcatttggagctccaagatttaaccgagcagcttccagccgctacaccccttgctttggtactgaaaaagttcttggcagattgtagtctggatcagtcttattctggtggcttgagttcctactgtttggtccacctgcaccaagccgaaaatcagcgcctgaccgacacgcgtggttacttaaccgcagctggttatgcagaggcagagtcgcagagatatagatccacatgggaggcacaggaggtgattgaggttgcgagttccggctgcgatgggaggcacctgatcgatattcttctccttctcatcgtcatctggctcatcgttatccctcgcccccaatttgattcagctcccggaatcctgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

135

Amino Acids

14.94

Weight (kDa)

4.73

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 315
AccII CGCG 1 cut(s) 205
AciI CCGC 2 cut(s) 72, 219
AclWI GGATC 2 cut(s) 132, 252
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 4 cut(s) 43, 64, 224, 389
AluI AGCT 4 cut(s) 43, 64, 224, 389
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 2 cut(s) 132, 252
AlwNI CAGNNNCTG 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 61, 221, 303
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 6, 292
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 73, 233, 290
BccI CCATC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 4 cut(s) 62, 72, 222, 304
BlsI GCNGC 4 cut(s) 63, 73, 223, 305
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 73, 233, 290
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 300, 393
BslI CCNNNNNNNGG 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 124, 257, 321
BspACI CCGC 2 cut(s) 72, 219
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 317
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 132, 252
BspT107I GGYRCC 1 cut(s) 315
BssMI GATC 3 cut(s) 124, 257, 321
Bst4CI ACNGT 1 cut(s) 158
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 127, 260, 324
BstMBI GATC 3 cut(s) 124, 257, 321
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 391
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 73, 233, 290
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 264
CviJI RGCY 9 cut(s) 43, 64, 71, 144, 179, 224, 303, 355, 389
CviKI_1 RGCY 9 cut(s) 43, 64, 71, 144, 179, 224, 303, 355, 389
CviQI GTAC 1 cut(s) 92
DpnI GATC 3 cut(s) 126, 259, 323
DpnII GATC 3 cut(s) 124, 257, 321
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 231, 255, 265
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 62, 72, 222, 304
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 62, 72, 222, 304
GlaI GCGC 1 cut(s) 191
GluI GCNGC 4 cut(s) 62, 72, 222, 304
HaeII RGCGCY 1 cut(s) 193
HapII CCGG 2 cut(s) 300, 393
HhaI GCGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 4 cut(s) 11, 242, 383, 396
HpaII CCGG 2 cut(s) 300, 393
HphI GGTGA 2 cut(s) 6, 292
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 122, 400
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 25, 172, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 124, 257, 321
LmnI GCTCC 3 cut(s) 40, 48, 394
Lsp1109I GCAGC 3 cut(s) 73, 233, 290
MaeIII GTNAC 2 cut(s) 8, 209
MalI GATC 3 cut(s) 126, 259, 323
MboI GATC 3 cut(s) 124, 257, 321
MboII GAAGA 1 cut(s) 323
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 2 cut(s) 377, 403
MluI ACGCGT 1 cut(s) 203
MlyI GAGTC 2 cut(s) 5, 251
MnlI CCTC 6 cut(s) 229, 262, 271, 280, 306, 378
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 2 cut(s) 53, 215
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 300, 393
MspR9I CCNGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 393
NdeII GATC 3 cut(s) 124, 257, 321
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 383, 396
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 4 cut(s) 63, 73, 223, 305
PleI GAGTC 2 cut(s) 5, 250
PpsI GAGTC 2 cut(s) 5, 250
Psp124BI GAGCTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 53, 215
SatI GCNGC 4 cut(s) 62, 72, 222, 304
Sau3AI GATC 3 cut(s) 124, 257, 321
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 5, 251
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 45, 66, 171, 226, 282, 291, 321, 391
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 2 cut(s) 377, 403
SsiI CCGC 2 cut(s) 72, 219
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 1 cut(s) 212
TasI AATT 2 cut(s) 377, 403
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 383, 396
Tru1I TTAA 2 cut(s) 53, 215
Tru9I TTAA 2 cut(s) 53, 215
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 3 cut(s) 61, 221, 303
Tsp45I GTSAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.