Rorug04G0115200

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007543
Physical Location & Seq
Reverse (-)
18153488 .. 18153847
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0115200.1

Sequence Viewer

Length: 360 bp
ATGGATCGAACGAGGATGAAGAGAGCTTCAAACCATGACCTGTTTCAGTCGTCGCCGTGGCCTGAAGAGGGAGATCGCTCCAGGTCCGTCGCTGCCTCCATTTTTGTCGTTCGATCTCTTGTCTCCGATGCAACTCGGAGCAAGCCAGTGGCTGGGGGAAGGAGAGGAGGAAATTTTGAGCCAGTTGGAGGTGGTGGCACAGCTGGAGGACGCCGGAATCGGAAGATAATTCTGGGTTGGGTCGGGCTCTTCGCCGACGGGTCGAGGGTTTGGCTAAGAGACCAAAAGTTCTGGAATTTTTCGAAAACTTTCCAAAATTGGAAAGTGAATTTATTTTCTGTTTATACCAAAATTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

11.48

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 172, 295, 328, 351
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 211
AfiI CCNNNNNNNGG 3 cut(s) 68, 152, 188
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 2 cut(s) 26, 203
AluI AGCT 2 cut(s) 26, 203
Alw26I GTCTC 2 cut(s) 127, 273
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 4 cut(s) 172, 295, 328, 351
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 127, 273
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 2 cut(s) 64, 225
Bpu14I TTCGAA 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 152, 188
Bse1I ACTGG 2 cut(s) 146, 182
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 3 cut(s) 68, 152, 188
BseNI ACTGG 2 cut(s) 146, 182
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 68, 152, 188
BsmAI GTCTC 2 cut(s) 127, 273
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 4, 73, 113
BspANI GGCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 146, 182
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 3 cut(s) 4, 73, 113
BssNI GRCGYC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 82
Bst6I CTCTTC 3 cut(s) 14, 60, 254
BstACI GRCGYC 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 3 cut(s) 7, 76, 116
BstMAI GTCTC 2 cut(s) 127, 273
BstMBI GATC 3 cut(s) 4, 73, 113
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 1 cut(s) 219
CviAII CATG 1 cut(s) 35
CviJI RGCY 8 cut(s) 26, 61, 145, 152, 181, 203, 247, 274
CviKI_1 RGCY 8 cut(s) 26, 61, 145, 152, 181, 203, 247, 274
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 6, 75, 115
DpnII GATC 3 cut(s) 4, 73, 113
Eam1104I CTCTTC 3 cut(s) 14, 60, 254
EarI CTCTTC 3 cut(s) 14, 60, 254
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 345
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 64, 225
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 211
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 127, 138, 222
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 3 cut(s) 55, 92, 260
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 211
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 3 cut(s) 4, 73, 113
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 83, 138
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 118
MalI GATC 3 cut(s) 6, 75, 115
MboI GATC 3 cut(s) 4, 73, 113
MboII GAAGA 4 cut(s) 31, 77, 235, 241
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 6 cut(s) 172, 228, 295, 316, 328, 351
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 8 cut(s) 6, 61, 106, 158, 161, 182, 200, 258
MroXI GAANNNNTTC 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
NdeII GATC 3 cut(s) 4, 73, 113
NlaIII CATG 1 cut(s) 38
NspV TTCGAA 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 80
PspPI GGNCC 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 254
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 4, 73, 113
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 28, 42, 86, 193, 205
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 84
Sse9I AATT 6 cut(s) 172, 228, 295, 316, 328, 351
StyD4I CCNGG 1 cut(s) 80
TaqI TCGA 4 cut(s) 7, 112, 263, 302
TasI AATT 6 cut(s) 172, 228, 295, 316, 328, 351
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 153
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 4 cut(s) 172, 295, 328, 351
XmnI GAANNNNTTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.