Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0007543

Physical Location & Seq

Genomic Coordinates Forward (+)

147338 .. 153491

Gene Structure 6154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgataccgggaggtggtattggtcaccgggatgtggatacgtcgtcgggatgtgatgctgtcaccgggaggttaattactatggctagattgatgattcctgaccgagttagcacagacccggagatgttgattgatgttatgaagtcttggcatgctgcagaatgggtgttccaatatctaggtgcccggaacctgaaaggattgagttgtggagacttgactagtgagcagaggtctcaacggtttgaatcgggtagtagctacggcgttggcaggcgagacccagaatctatgggtaggatccgagagttccccgtggcgggaactcggatgggatcagggggaagccaccgagagggcaagacgataccggtgaagccaacgggtaccgtcaccgagcgaaggttgaaatgtgtcgctgagatcgggagaggtgattcaccaagaggtgctcgcgaaggtgttgatacattggggtttcgaataagtcactcgattggcggcggcgtcgtattgggtttgggagttgtgaaagcttgtctgtacctgcatatagcttctggtcttctagtaccagaagccaagctgtttctgcatttggaggatttgctttatgtggataaagccaaaccccatgatcgcaggacgatgcatagtcatttgcaggttaaagatttaactgagcagtttccagccgctagaccccttgctttggcactgaaacagttcttggcagattgtagtctggatcagtcttattctggtggcttgagttcctactgtttggtaccactaattgtgcgttttccccagcatgagtgtcttcttgaccgacctatcaaccaagactttggagaccttctgatgaattttctttatttttttgggaatgtttttgatcctcggcaaatgcgtatttccgtacagggaagtggcgttcatataaagagggaaagaggttgcagcatcgaccccacacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

328

Amino Acids

36.06

Weight (kDa)

8.61

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316831 RchiOBHm_Chr2g0167831 RchiOBHm_Chr2g0167841 RchiOBHm_Chr5g0049311 RchiOBHm_Chr5g0049321 RchiOBHm_Chr7g0229001
rosa_laevigata	RLG00000030641
rosa_multiflora	Rmu_sc0006695.1_g000030 Rmu_sc0006695.1_g000031 Rmu_ssc0000059.1_g000008
rosa_roxburghii	Rroxscaffold_7G00194280
rosa_rugosa	Rorug02G0058500 Rorug02G0175900 Rorug03G0198300 Rorug04G0115200
rosa_samantha	Rh1AG024200 Rh1AG198900 Rh1BG003300 Rh1CG011000 Rh1DG021200 Rh2BG611900 Rh2CG283900 Rh5BG335100 Rh5DG347400
rosa_wichuraiana	Rw1G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	558, 658
Acc65I	GGTACC	2 cut(s)	389, 790
AccB1I	GGYRCC	3 cut(s)	185, 389, 790
AccII	CGCG	1 cut(s)	459
AciI	CCGC	4 cut(s)	323, 504, 507, 699
AclWI	GGATC	5 cut(s)	298, 311, 346, 759, 896
AcsI	RAATTY	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	5 cut(s)	391, 548, 576, 792, 927
AfiI	CCNNNNNNNGG	7 cut(s)	14, 34, 322, 323, 358, 405, 715
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	251, 412
AhlI	ACTAGT	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AloI	GAACNNNNNNTCC	2 cut(s)	924, 956
AluBI	AGCT	4 cut(s)	264, 539, 560, 589
AluI	AGCT	4 cut(s)	264, 539, 560, 589
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	4 cut(s)	210, 243, 276, 852
AlwI	GGATC	5 cut(s)	298, 311, 346, 759, 896
ApeKI	GCWGC	2 cut(s)	158, 966
ApoI	RAATTY	1 cut(s)	871
AsiGI	ACCGGT	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	728
Asp718I	GGTACC	2 cut(s)	389, 790
AsuC2I	CCSGG	5 cut(s)	9, 29, 67, 122, 190
AsuHPI	GGTGA	6 cut(s)	17, 55, 388, 388, 435, 449
AsuII	TTCGAA	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	3 cut(s)	185, 389, 790
BbsI	GAAGAC	2 cut(s)	560, 818
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	145, 978
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	5 cut(s)	9, 29, 67, 122, 190
BcoDI	GTCTC	4 cut(s)	210, 243, 276, 852
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	5 cut(s)	87, 182, 225, 572, 702
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	558, 658
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	5 cut(s)	159, 505, 508, 699, 967
BlsI	GCNGC	5 cut(s)	160, 506, 509, 700, 968
Bme1390I	CCNGG	5 cut(s)	9, 29, 67, 122, 190
BmiI	GGNNCC	5 cut(s)	187, 194, 305, 391, 792
BmrFI	CCNGG	5 cut(s)	9, 29, 67, 122, 190
BmsI	GCATC	3 cut(s)	46, 642, 978
BpiI	GAAGAC	2 cut(s)	560, 818
Bpu14I	TTCGAA	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	5 cut(s)	9, 29, 67, 122, 190
BsaHI	GRCGYC	1 cut(s)	510
BsaI	GGTCTC	3 cut(s)	243, 276, 852
BsaJI	CCNNGG	2 cut(s)	318, 905
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 34, 322, 323, 358, 405, 715
Bse118I	RCCGGY	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	318, 905
BseGI	GGATG	3 cut(s)	37, 56, 339
BseLI	CCNNNNNNNGG	7 cut(s)	14, 34, 322, 323, 358, 405, 715
BseMII	CTCAG	2 cut(s)	414, 675
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	145, 978
BseYI	CCCAGC	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	459
BshNI	GGYRCC	3 cut(s)	185, 389, 790
BshTI	ACCGGT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	6 cut(s)	8, 28, 66, 122, 190, 374
BslI	CCNNNNNNNGG	7 cut(s)	14, 34, 322, 323, 358, 405, 715
BsmAI	GTCTC	4 cut(s)	210, 243, 276, 852
Bso31I	GGTCTC	3 cut(s)	243, 276, 852
Bsp119I	TTCGAA	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	190, 457
Bsp143I	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
Bsp68I	TCGCGA	1 cut(s)	459
BspACI	CCGC	4 cut(s)	323, 504, 507, 699
BspCNI	CTCAG	2 cut(s)	415, 676
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	5 cut(s)	187, 194, 305, 391, 792
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	558, 658
BspPI	GGATC	5 cut(s)	298, 311, 346, 759, 896
BspT104I	TTCGAA	1 cut(s)	484
BspT107I	GGYRCC	3 cut(s)	185, 389, 790
BspTNI	GGTCTC	3 cut(s)	243, 276, 852
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	318, 905
BssMI	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
BssNI	GRCGYC	1 cut(s)	510
Bst4CI	ACNGT	4 cut(s)	246, 394, 729, 785
BstACI	GRCGYC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	156, 278, 457
BstDEI	CTNAG	2 cut(s)	423, 684
BstDSI	CCRYGG	1 cut(s)	318
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	37, 56, 339
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	6 cut(s)	306, 341, 429, 643, 754, 904
BstMAI	GTCTC	4 cut(s)	210, 243, 276, 852
BstMBI	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	5 cut(s)	7, 27, 65, 120, 188
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	145, 978
BstV2I	GAAGAC	2 cut(s)	560, 818
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	37, 56, 339
BtsIMutI	CAGTG	1 cut(s)	719
BtuMI	TCGCGA	1 cut(s)	459
BveI	ACCTGC	2 cut(s)	558, 658
Cac8I	GCNNGC	3 cut(s)	156, 278, 457
Cfr10I	RCCGGY	1 cut(s)	373
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	5 cut(s)	390, 547, 575, 791, 926
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	3 cut(s)	155, 638, 818
CviQI	GTAC	5 cut(s)	390, 547, 575, 791, 926
DdeI	CTNAG	2 cut(s)	423, 684
DpnI	GATC	6 cut(s)	305, 340, 428, 642, 753, 903
DpnII	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
Eco31I	GGTCTC	3 cut(s)	243, 276, 852
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	657
FaeI	CATG	3 cut(s)	158, 641, 821
FatI	CATG	3 cut(s)	154, 637, 817
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	5 cut(s)	159, 505, 508, 699, 967
FokI	GGATG	3 cut(s)	44, 63, 346
Fsp4HI	GCNGC	5 cut(s)	159, 505, 508, 699, 967
FspBI	CTAG	5 cut(s)	87, 182, 225, 572, 702
GluI	GCNGC	5 cut(s)	159, 505, 508, 699, 967
GsaI	CCCAGC	1 cut(s)	817
HapII	CCGG	6 cut(s)	8, 28, 66, 122, 190, 374
HgaI	GACGC	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	3 cut(s)	158, 641, 821
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	4 cut(s)	97, 251, 290, 440
HpaII	CCGG	6 cut(s)	8, 28, 66, 122, 190, 374
HphI	GGTGA	6 cut(s)	17, 55, 388, 388, 435, 449
Hpy188I	TCNGA	3 cut(s)	308, 333, 867
Hpy188III	TCNNGA	6 cut(s)	48, 101, 430, 458, 749, 830
Hpy99I	CGWCG	3 cut(s)	46, 49, 515
HpyAV	CCTTC	3 cut(s)	399, 455, 872
HpyCH4III	ACNGT	4 cut(s)	246, 394, 729, 785
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	161, 553, 598, 655, 667, 966
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	2 cut(s)	423, 684
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	158, 641, 821
KpnI	GGTACC	2 cut(s)	393, 794
Kzo9I	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
Lsp1109I	GCAGC	2 cut(s)	145, 978
LweI	GCATC	3 cut(s)	46, 642, 978
MaeI	CTAG	5 cut(s)	87, 182, 225, 572, 702
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	23, 61, 394, 491
MalI	GATC	6 cut(s)	305, 340, 428, 642, 753, 903
MboI	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
MboII	GAAGA	2 cut(s)	560, 818
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	190, 457
MluCI	AATT	3 cut(s)	75, 798, 871
Mph1103I	ATGCAT	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	3 cut(s)	74, 672, 680
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	6 cut(s)	8, 28, 66, 122, 190, 374
MspR9I	CCNGG	5 cut(s)	9, 29, 67, 122, 190
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	595
NciI	CCSGG	5 cut(s)	9, 29, 67, 122, 190
NdeII	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
NlaIII	CATG	3 cut(s)	158, 641, 821
NlaIV	GGNNCC	5 cut(s)	187, 194, 305, 391, 792
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	4 cut(s)	23, 61, 394, 491
NruI	TCGCGA	1 cut(s)	459
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	484
PaeI	GCATGC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	913
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	4 cut(s)	97, 251, 290, 440
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	5 cut(s)	160, 506, 509, 700, 968
PspEI	GGTNACC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	813
PspN4I	GGNNCC	5 cut(s)	187, 194, 305, 391, 792
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	303
RruI	TCGCGA	1 cut(s)	459
RsaI	GTAC	5 cut(s)	391, 548, 576, 792, 927
RsaNI	GTAC	5 cut(s)	390, 547, 575, 791, 926
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	74, 672, 680
SatI	GCNGC	5 cut(s)	159, 505, 508, 699, 967
Sau3AI	GATC	6 cut(s)	303, 338, 426, 640, 751, 901
ScrFI	CCNGG	5 cut(s)	9, 29, 67, 122, 190
SduI	GDGCHC	2 cut(s)	190, 457
SfaNI	GCATC	3 cut(s)	46, 642, 978
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
SpeI	ACTAGT	1 cut(s)	224
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	3 cut(s)	75, 798, 871
SsiI	CCGC	4 cut(s)	323, 504, 507, 699
SspMI	CTAG	5 cut(s)	87, 182, 225, 572, 702
StyD4I	CCNGG	5 cut(s)	7, 27, 65, 120, 188
TaaI	ACNGT	4 cut(s)	246, 394, 729, 785
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	484, 497, 972
TaqII	GACCGA	2 cut(s)	120, 849
TasI	AATT	3 cut(s)	75, 798, 871
TauI	GCSGC	3 cut(s)	507, 510, 701
TfiI	GAWTC	4 cut(s)	97, 251, 290, 440
Tru1I	TTAA	3 cut(s)	74, 672, 680
Tru9I	TTAA	3 cut(s)	74, 672, 680
TscAI	CASTG	1 cut(s)	726
TseFI	GTSAC	4 cut(s)	23, 61, 394, 491
TseI	GCWGC	2 cut(s)	158, 966
Tsp45I	GTSAC	4 cut(s)	23, 61, 394, 491
TspDTI	ATGAA	3 cut(s)	158, 884, 932
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	1 cut(s)	726
XapI	RAATTY	1 cut(s)	871
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	728
XspI	CTAG	5 cut(s)	87, 182, 225, 572, 702
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.