Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007543

Physical Location & Seq

Genomic Coordinates Reverse (-)

3314572 .. 3319738

Gene Structure 5167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTCTCGGGGTTTGATTCTGGAGATTGCTTATTCAATTTGTTGCTCTATTTGTTTGTTTGGTGCGACAATGTGAGATATTTACTGCTATCCACTGCCAAGGTTACTGGCTTTGTGGAAACAATTGTAGATAGTCATTTGCAGATTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACCCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCATAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGGTACTACTAATTGTGCGTTTTCCGCAGCATGAGTGTCTTCTTGGCCTACCTATGAACCAAGACTTCAGAGACCTTCTGATGAATTTCTTTATTTTTTTGGTACAGGGAAAGGGAGTTTATATAAAGAGGGAAAGAGGTTGCAGCATCGACCCATACACATTCATGATCCCCTTTTTCCGACTAATAATGTGGGACGCAATTGCTTTTGGATACATCAATGTATCATGGTTTGGCACCGCTGGGCTTCCTAGTGATGTTGTTGAAGTTGGAGAAATGTCTTTCCATCTTCATAATTTTCTTTTGCTCTCAAGAAGTGGGTTCATGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

5.05

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007543)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316831 RchiOBHm_Chr2g0167831 RchiOBHm_Chr2g0167841 RchiOBHm_Chr5g0049311 RchiOBHm_Chr5g0049321 RchiOBHm_Chr7g0229001
rosa_laevigata	RLG00000030641
rosa_multiflora	Rmu_sc0006695.1_g000030 Rmu_sc0006695.1_g000031 Rmu_ssc0000059.1_g000008
rosa_roxburghii	Rroxscaffold_7G00194280
rosa_rugosa	Rorug02G0058500 Rorug02G0175900 Rorug03G0198300 Rorug04G0115200
rosa_samantha	Rh1AG024200 Rh1AG198900 Rh1BG003300 Rh1CG011000 Rh1DG021200 Rh2BG611900 Rh2CG283900 Rh5BG335100 Rh5DG347400
rosa_wichuraiana	Rw1G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	3 cut(s)	174, 287, 501
AclWI	GGATC	2 cut(s)	234, 424
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	313
AfaI	GTAC	3 cut(s)	195, 267, 366
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	37, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	234, 424
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	289, 405
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	301, 417
BccI	CCATC	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	174, 290, 406
BlsI	GCNGC	3 cut(s)	175, 291, 407
BmeT110I	CYCGRG	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	499
BmsI	GCATC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	268, 556
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	301, 417
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	214, 226, 429
BspACI	CCGC	3 cut(s)	174, 287, 501
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	499
BspPI	GGATC	2 cut(s)	234, 424
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	214, 226, 429
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	204, 260
BstDEI	CTNAG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	217, 229, 432
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	214, 226, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	301, 417
BstV2I	GAAGAC	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	426
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	194, 266, 365
CviAII	CATG	4 cut(s)	293, 427, 489, 586
CviJI	RGCY	5 cut(s)	111, 173, 246, 309, 508
CviKI_1	RGCY	5 cut(s)	111, 173, 246, 309, 508
CviQI	GTAC	3 cut(s)	194, 266, 365
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	216, 228, 431
DpnII	GATC	3 cut(s)	214, 226, 429
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	4 cut(s)	296, 430, 492, 589
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	4 cut(s)	292, 426, 488, 585
Fnu4HI	GCNGC	3 cut(s)	174, 290, 406
Fsp4HI	GCNGC	3 cut(s)	174, 290, 406
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	3 cut(s)	174, 290, 406
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	309
HgaI	GACGC	1 cut(s)	467
Hin1II	CATG	4 cut(s)	296, 430, 492, 589
HinfI	GANTC	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	332, 342, 443
Hpy188III	TCNNGA	4 cut(s)	21, 224, 427, 573
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	204, 260
HpyCH4V	TGCA	2 cut(s)	142, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	296, 430, 492, 589
Kzo9I	GATC	3 cut(s)	214, 226, 429
LpnPI	CCDG	7 cut(s)	6, 93, 183, 209, 225, 353, 489
Lsp1109I	GCAGC	2 cut(s)	301, 417
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	216, 228, 431
MboI	GATC	3 cut(s)	214, 226, 429
MboII	GAAGA	2 cut(s)	293, 542
MfeI	CAATTG	2 cut(s)	123, 462
MluCI	AATT	6 cut(s)	37, 123, 273, 346, 462, 556
MmeI	TCCRAC	2 cut(s)	466, 511
MnlI	CCTC	2 cut(s)	384, 392
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	147, 155
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	503
MunI	CAATTG	2 cut(s)	123, 462
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	3 cut(s)	214, 226, 429
NlaIII	CATG	4 cut(s)	296, 430, 492, 589
NlaIV	GGNNCC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	175, 291, 407
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	499
RsaI	GTAC	3 cut(s)	195, 267, 366
RsaNI	GTAC	3 cut(s)	194, 266, 365
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	147, 155
SatI	GCNGC	3 cut(s)	174, 290, 406
Sau3AI	GATC	3 cut(s)	214, 226, 429
SetI	ASST	4 cut(s)	105, 316, 339, 403
SfaNI	GCATC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	247, 571
SmoI	CTYRAG	2 cut(s)	247, 571
Sse9I	AATT	6 cut(s)	37, 123, 273, 346, 462, 556
SsiI	CCGC	3 cut(s)	174, 287, 501
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	204, 260
TaqI	TCGA	1 cut(s)	411
TasI	AATT	6 cut(s)	37, 123, 273, 346, 462, 556
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	147, 155
Tru9I	TTAA	2 cut(s)	147, 155
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	289, 405
TspDTI	ATGAA	5 cut(s)	332, 359, 415, 542, 574
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.