Rmu_sc0006695.1_g000031

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0007543
Physical Location & Seq
Forward (+)
153515 .. 156242
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000031.1.cds

Sequence Viewer

Length: 420 bp
atgtgggacgcaattgcttttggatacatcaatgtatcaaggtttttcaccactgggcttcctagtgatgttgttgttgaagttggagaaatgtctttccatcttcataattttcttttgctctcaagaagtcgagtcatggaaaaggagagttgtctgcccatcgctagcatcattttctgcattagttatatccagaaactacctacaattgctgtgttattggaaagaaatagaggcttgaagaggattgagctctgtgcagttggaaccaaaatcgatgataccagctctgttggcatcaaatatggtctcgattattgttattttcgagttctagctgccatatttttttatcggaatcttgctgccatgttgaatggaaattttttggagatgtcagaaattccggagttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

6.09

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 409
AcsI RAATTY 2 cut(s) 385, 405
AgsI TTSAA 3 cut(s) 80, 244, 379
AluBI AGCT 3 cut(s) 256, 291, 341
AluI AGCT 3 cut(s) 256, 291, 341
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 341, 368
ApoI RAATTY 2 cut(s) 385, 405
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 328, 355
BccI CCATC 2 cut(s) 108, 170
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 3 cut(s) 63, 168, 338
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 2 cut(s) 342, 369
BlsI GCNGC 2 cut(s) 343, 370
BmiI GGNNCC 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 180, 309
BmtI GCTAGC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 409
BseCI ATCGAT 1 cut(s) 279
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 328, 355
BsgI GTGCAG 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 409
BspDI ATCGAT 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 328, 355
Bsu15I ATCGAT 1 cut(s) 279
BsuI GTATCC 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 17
CviAII CATG 2 cut(s) 139, 373
CviJI RGCY 5 cut(s) 58, 240, 256, 291, 341
CviKI_1 RGCY 5 cut(s) 58, 240, 256, 291, 341
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 2 cut(s) 142, 376
FaiI YATR 6 cut(s) 108, 140, 192, 309, 347, 374
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 138, 372
Fnu4HI GCNGC 2 cut(s) 342, 369
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 342, 369
FspBI CTAG 3 cut(s) 63, 168, 338
GluI GCNGC 2 cut(s) 342, 369
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 142, 376
HinfI GANTC 2 cut(s) 135, 361
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 360, 403
Hpy188III TCNNGA 4 cut(s) 126, 196, 314, 410
HpyCH4V TGCA 2 cut(s) 183, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 142, 376
Kpn2I TCCGGA 1 cut(s) 409
LpnPI CCDG 3 cut(s) 39, 209, 301
Lsp1109I GCAGC 2 cut(s) 328, 355
LweI GCATC 2 cut(s) 180, 309
MaeI CTAG 3 cut(s) 63, 168, 338
MboII GAAGA 2 cut(s) 95, 256
MfeI CAATTG 2 cut(s) 12, 210
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 5 cut(s) 12, 109, 210, 385, 405
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 2 cut(s) 64, 247
MnlI CCTC 2 cut(s) 230, 240
MroI TCCGGA 1 cut(s) 409
MseI TTAA 1 cut(s) 418
MspI CCGG 1 cut(s) 410
MunI CAATTG 2 cut(s) 12, 210
MwoI GCNNNNNNNGC 1 cut(s) 297
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 2 cut(s) 142, 376
NlaIV GGNNCC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 2 cut(s) 343, 370
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 271
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 2 cut(s) 342, 369
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 1 cut(s) 258
SetI ASST 5 cut(s) 44, 208, 258, 293, 343
SfaNI GCATC 2 cut(s) 180, 309
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 5 cut(s) 12, 109, 210, 385, 405
SspMI CTAG 3 cut(s) 63, 168, 338
SstI GAGCTC 1 cut(s) 258
TaqI TCGA 4 cut(s) 133, 279, 315, 331
TasI AATT 5 cut(s) 12, 109, 210, 385, 405
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 58
TseI GCWGC 2 cut(s) 341, 368
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 385, 405
XspI CTAG 3 cut(s) 63, 168, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.