Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

5634762 .. 5635871

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATCAAAGTTATTCTTGTACAGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAATTTTTCTTTTGCAACTGAACAACTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGTTTCTGCGACTGGATAAACAATCATTTACAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTGTAGAGGTGTCAATCACATGGCTGAAATTTTTACAGGGTAAAGGACCTCATTTCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

5.5

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	13 - 67	1.7e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	232, 295, 355
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	41, 113, 209
BciVI	GTATCC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	3, 50, 382
BspACI	CCGC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	3, 50, 382
Bst4CI	ACNGT	2 cut(s)	136, 153
BstAUI	TGTACA	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	6, 53, 385
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	3, 50, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	2 cut(s)	258, 377
CviJI	RGCY	2 cut(s)	262, 341
CviKI_1	RGCY	2 cut(s)	262, 341
CviQI	GTAC	1 cut(s)	20
DpnI	GATC	3 cut(s)	5, 52, 384
DpnII	GATC	3 cut(s)	3, 50, 382
EciI	GGCGGA	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	284
FaeI	CATG	2 cut(s)	261, 380
FaiI	YATR	7 cut(s)	132, 203, 205, 213, 259, 324, 378
FalI	AAGNNNNNCTT	3 cut(s)	32, 330, 362
FatI	CATG	2 cut(s)	257, 376
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	261, 380
HinfI	GANTC	2 cut(s)	225, 305
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	55, 310
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	136, 153
HpyCH4V	TGCA	3 cut(s)	76, 114, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	261, 380
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 50, 382
LpnPI	CCDG	4 cut(s)	8, 142, 155, 260
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	302
MalI	GATC	3 cut(s)	5, 52, 384
MboI	GATC	3 cut(s)	3, 50, 382
MboII	GAAGA	2 cut(s)	56, 68
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	63, 266
MnlI	CCTC	4 cut(s)	19, 22, 238, 297
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	3 cut(s)	3, 50, 382
NlaIII	CATG	2 cut(s)	261, 380
PfeI	GAWTC	2 cut(s)	225, 305
PkrI	GCNGC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	284
PspPPI	RGGWCCY	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	3, 50, 382
Sau96I	GGNCC	1 cut(s)	284
SetI	ASST	8 cut(s)	33, 130, 161, 240, 249, 289, 343, 360
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	63, 266
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	136, 153
TasI	AATT	2 cut(s)	63, 266
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	225, 305
TseI	GCWGC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.