Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

8292961 .. 8295966

Gene Structure 3006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATATACCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCGTCCAGATAAGTGAAGGGGAATCTATAAATGATGGAGGAATTAGATTAAAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAGAAGAAATGATAATGGAACCTGGAAATGTGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAGTTTCGCTTTTGCAATCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGGACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGTATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

194

Amino Acids

21.52

Weight (kDa)

4.94

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	52 - 117	4.8e-10	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	3 cut(s)	208, 520, 536
AcsI	RAATTY	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	339, 382, 475
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	7 cut(s)	42, 121, 237, 461, 514, 533, 539
AluI	AGCT	7 cut(s)	42, 121, 237, 461, 514, 533, 539
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	208, 520, 536
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	131
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	3 cut(s)	25, 490, 564
AvaII	GGWCC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	5 cut(s)	86, 191, 263, 359, 557
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	2 cut(s)	392, 422
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	325
BshTI	ACCGGT	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	256
Bsp143I	GATC	5 cut(s)	15, 200, 502, 525, 541
BspACI	CCGC	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	208, 520, 536
BspTI	CTTAAG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	5 cut(s)	15, 200, 502, 525, 541
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	214, 286, 303
BstAFI	CTTAAG	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	308
BstEII	GGTNACC	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	5 cut(s)	18, 203, 505, 528, 544
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	5 cut(s)	15, 200, 502, 525, 541
BstNI	CCWGG	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	2 cut(s)	125, 497
CviJI	RGCY	8 cut(s)	42, 121, 237, 310, 461, 514, 533, 539
CviKI_1	RGCY	8 cut(s)	42, 121, 237, 310, 461, 514, 533, 539
DpnI	GATC	5 cut(s)	17, 202, 504, 527, 543
DpnII	GATC	5 cut(s)	15, 200, 502, 525, 541
EciI	GGCGGA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	570
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	128, 500
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	2 cut(s)	124, 496
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	2 cut(s)	392, 422
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	555
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	2 cut(s)	128, 500
HinfI	GANTC	3 cut(s)	80, 375, 425
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	25, 490, 564
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	205, 430, 530
Hpy188III	TCNNGA	3 cut(s)	64, 379, 392
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	68, 398, 469, 561
HpyCH4III	ACNGT	3 cut(s)	214, 286, 303
HpyCH4V	TGCA	3 cut(s)	226, 264, 306
Hsp92II	CATG	2 cut(s)	128, 500
Kzo9I	GATC	5 cut(s)	15, 200, 502, 525, 541
LmnI	GCTCC	1 cut(s)	536
LpnPI	CCDG	9 cut(s)	24, 77, 150, 156, 177, 292, 305, 447, 519
Lsp1109I	GCAGC	1 cut(s)	475
MaeI	CTAG	2 cut(s)	392, 422
MaeIII	GTNAC	1 cut(s)	570
MalI	GATC	5 cut(s)	17, 202, 504, 527, 543
MboI	GATC	5 cut(s)	15, 200, 502, 525, 541
MboII	GAAGA	3 cut(s)	158, 206, 218
MflI	RGATCY	1 cut(s)	502
MluCI	AATT	3 cut(s)	26, 99, 131
MnlI	CCTC	7 cut(s)	25, 89, 121, 169, 172, 388, 417
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	44, 107, 117
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	15, 200, 502, 525, 541
NlaIII	CATG	2 cut(s)	128, 500
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	80, 375, 425
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	44, 107, 117
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	5 cut(s)	15, 200, 502, 525, 541
Sau96I	GGNCC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	26, 99, 131
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	392, 422
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	214, 286, 303
TasI	AATT	3 cut(s)	26, 99, 131
TfiI	GAWTC	3 cut(s)	80, 375, 425
Tru1I	TTAA	3 cut(s)	44, 107, 117
Tru9I	TTAA	3 cut(s)	44, 107, 117
TseFI	GTSAC	1 cut(s)	570
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	404
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	392, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.