Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Forward (+)

13680167 .. 13681403

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG174700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTAAAGGTGAATAGTGCTGCTTATCATGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACTGATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

93

Amino Acids

10.47

Weight (kDa)

6.9

Isoelectric Point (pI)

65.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	2 cut(s)	217, 233
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	36, 79
AluBI	AGCT	4 cut(s)	158, 211, 230, 236
AluI	AGCT	4 cut(s)	158, 211, 230, 236
AlwI	GGATC	2 cut(s)	217, 233
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	187, 261
AvaII	GGWCC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	56, 254
BciVI	GTATCC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	89, 119
BfuI	GTATCC	1 cut(s)	50
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	199, 222, 238
BspACI	CCGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	217, 233
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	199, 222, 238
BssT1I	CCWWGG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	202, 225, 241
BstMBI	GATC	3 cut(s)	199, 222, 238
BstPI	GGTNACC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	7, 158, 211, 230, 236
CviKI_1	RGCY	5 cut(s)	7, 158, 211, 230, 236
DpnI	GATC	3 cut(s)	201, 224, 240
DpnII	GATC	3 cut(s)	199, 222, 238
DraI	TTTAAA	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	101
Eco91I	GGTNACC	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	197
FaiI	YATR	8 cut(s)	50, 52, 60, 108, 141, 195, 258, 280
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	89, 119
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	252
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	2 cut(s)	72, 122
HphI	GGTGA	2 cut(s)	187, 261
Hpy188I	TCNGA	2 cut(s)	127, 227
Hpy188III	TCNNGA	2 cut(s)	76, 89
HpyAV	CCTTC	2 cut(s)	95, 258
HpyCH4V	TGCA	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	199, 222, 238
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	2 cut(s)	2, 216
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	89, 119
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	201, 224, 240
MboI	GATC	3 cut(s)	199, 222, 238
MflI	RGATCY	1 cut(s)	199
MnlI	CCTC	2 cut(s)	85, 114
MseI	TTAA	1 cut(s)	170
NdeII	GATC	3 cut(s)	199, 222, 238
NlaIII	CATG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	72, 122
PkrI	GCNGC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
PspEI	GGTNACC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	101
PspPPI	RGGWCCY	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	199, 222, 238
Sau96I	GGNCC	1 cut(s)	101
SetI	ASST	8 cut(s)	87, 106, 160, 177, 213, 232, 238, 269
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	101
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	89, 119
StyI	CCWWGG	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	72, 122
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	88
XspI	CTAG	2 cut(s)	89, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.