Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

25671256 .. 25674649

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGTGTTGACACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATTCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAGAATACAGTGAGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAGTTTCGCTTTTGCAACCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACAGTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTAAAGGTGAATAGTGCTGCTTATCATGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAAATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

177

Amino Acids

19.78

Weight (kDa)

5.21

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	46 - 100	6.5e-10	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	3 cut(s)	157, 469, 485
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	288, 331
AluBI	AGCT	6 cut(s)	61, 186, 410, 463, 482, 488
AluI	AGCT	6 cut(s)	61, 186, 410, 463, 482, 488
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	3 cut(s)	157, 469, 485
ApeKI	GCWGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	439, 513
AvaII	GGWCC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	4 cut(s)	140, 212, 308, 506
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	62, 341, 371
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmcAI	AGTACT	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmsI	GCATC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	137, 140
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	103, 149, 451, 474, 490
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	49
BspPI	GGATC	3 cut(s)	157, 469, 485
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	5 cut(s)	103, 149, 451, 474, 490
BssT1I	CCWWGG	1 cut(s)	525
Bst4CI	ACNGT	5 cut(s)	119, 163, 235, 252, 383
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	5 cut(s)	106, 152, 454, 477, 493
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	5 cut(s)	103, 149, 451, 474, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 124
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	1 cut(s)	446
CviJI	RGCY	7 cut(s)	61, 186, 259, 410, 463, 482, 488
CviKI_1	RGCY	7 cut(s)	61, 186, 259, 410, 463, 482, 488
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	5 cut(s)	105, 151, 453, 476, 492
DpnII	GATC	5 cut(s)	103, 149, 451, 474, 490
DraI	TTTAAA	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	449
FaiI	YATR	9 cut(s)	231, 302, 304, 312, 360, 393, 447, 510, 532
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	62, 341, 371
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	504
Hin1II	CATG	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	324, 374
HphI	GGTGA	2 cut(s)	439, 513
Hpy166II	GTNNAC	2 cut(s)	10, 248
Hpy188I	TCNGA	5 cut(s)	99, 108, 154, 379, 479
Hpy188III	TCNNGA	2 cut(s)	328, 341
Hpy8I	GTNNAC	2 cut(s)	10, 248
HpyAV	CCTTC	2 cut(s)	347, 510
HpyCH4III	ACNGT	5 cut(s)	119, 163, 235, 252, 383
HpyCH4V	TGCA	5 cut(s)	17, 175, 213, 255, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	103, 149, 451, 474, 490
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	5 cut(s)	68, 69, 241, 254, 468
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	62, 341, 371
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	5 cut(s)	105, 151, 453, 476, 492
MboI	GATC	5 cut(s)	103, 149, 451, 474, 490
MboII	GAAGA	2 cut(s)	155, 167
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	1 cut(s)	505
MnlI	CCTC	6 cut(s)	61, 115, 118, 121, 337, 366
MseI	TTAA	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	5 cut(s)	103, 149, 451, 474, 490
NlaIII	CATG	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	324, 374
PkrI	GCNGC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	5 cut(s)	103, 149, 451, 474, 490
Sau96I	GGNCC	1 cut(s)	353
ScaI	AGTACT	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	3 cut(s)	62, 341, 371
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	5 cut(s)	119, 163, 235, 252, 383
TasI	AATT	1 cut(s)	505
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	324, 374
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	19, 124
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	519
TspRI	CASTG	2 cut(s)	19, 124
VpaK11BI	GGWCC	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	340
XspI	CTAG	3 cut(s)	62, 341, 371
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.