Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

17799317 .. 17822558

Gene Structure 23242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATCAATCCTCTTCAGTCTCTTTACGAACTCGGGTTTTTCATTTTCCAAAAGAAAAGGTTGCACAGCTCAAAGCAAAGGCCAATGCTGAGAGGGGTACCAATAACATCTCCTCCCTTCAAGCACTCATGGCCCATTTCTGGTGCGCCACAATACGTAACAGACATGATTTAAACCCTGATGATGAGGTTAGTTATTTCATTGCGACAGGATTGAGACAAAGATTGAAGCCACCATTGCCAGAAGAATACTTTGGGAATGCGCTTGAAGGGATTTCTGTTAAGTCCACTGCAGGTGGCTTATCCCAGATTGGAAACGAAGATGGCACCACTCGCTTTTTCATCAACTGTAACGGCGCAGGAGCCCAATTTGTTCATGCAGCTCATGATGGTATCAGAGTGGCTGATATCCTTGACCCTATTTACATTCCTGATGAGATTTTCGAAAACCTCTTTGCTATGAATTCAGTTCTAAGCTATGAAGGCATTTTGAAACCATTGCTTTCAGTGCAATTCACTGAGCTTGCTGATGCCATCTTTATCGGTTGCAGCATAAACCATGTGGTTGTGGATGGTACCTCTTTCTGGCTTCTCTTCCCAAAGCTAGCAGAGAAAGAAGTAGACCAGAGCTTGATACAACACCTAAAAGTTTCCCTTTCTTGCACTTTGAATATCTTGTACCCACTAGCAGGTCGCTTATCCCAGATTGAAAACGAAGATGGCACCACTTTCTTTTTCATCAACTGTAACAGCGCACGAGCCCAATTTGTTCATGCAGCTCATGATGGTGTTAGAGTGGCTGATATTCTTGACCCTGTTTACATTCCTGGTGAGATTATCGAAAACCTATTTTCTATGAATTCAGTTCTGAACTATGAAGGCTCTTCAAAACCATTGCTTGTAGTGCAAATCACTGAGCTTGCGGATGGCATATTTATAGGTTGCAGCATAAACCATGTGGTTGCATATGGCACCTCTTTCTGGCATTTCTATAATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

333

Amino Acids

36.85

Weight (kDa)

5.24

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 101	3.3e-13	Transferase family
Transferase	PF02458	108 - 204	3.6e-18	Transferase family
Transferase	PF02458	205 - 332	3e-25	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	2 cut(s)	284, 680
Acc65I	GGTACC	2 cut(s)	98, 575
AccB1I	GGYRCC	5 cut(s)	98, 326, 575, 722, 971
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	1 cut(s)	923
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	463, 859
AfaI	GTAC	3 cut(s)	100, 577, 680
AfiI	CCNNNNNNNGG	4 cut(s)	141, 585, 689, 981
AgsI	TTSAA	7 cut(s)	122, 229, 269, 493, 670, 710, 888
AjnI	CCWGG	1 cut(s)	826
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	8 cut(s)	70, 383, 477, 523, 604, 630, 779, 919
AluI	AGCT	8 cut(s)	70, 383, 477, 523, 604, 630, 779, 919
Alw26I	GTCTC	2 cut(s)	25, 211
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	2 cut(s)	81, 132
ApeKI	GCWGC	4 cut(s)	380, 549, 776, 945
ApoI	RAATTY	2 cut(s)	463, 859
Asp718I	GGTACC	2 cut(s)	98, 575
AspLEI	GCGC	4 cut(s)	149, 265, 359, 755
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	842
AsuII	TTCGAA	1 cut(s)	444
AsuNHI	GCTAGC	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	33
BanI	GGYRCC	5 cut(s)	98, 326, 575, 722, 971
BanII	GRGCYC	2 cut(s)	367, 763
BauI	CACGAG	1 cut(s)	756
BbvI	GCAGC	4 cut(s)	392, 561, 788, 957
BccI	CCATC	7 cut(s)	317, 383, 542, 566, 713, 779, 920
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	25, 211
BfaI	CTAG	2 cut(s)	605, 686
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	2 cut(s)	284, 680
BisI	GCNGC	4 cut(s)	381, 550, 777, 946
BlsI	GCNGC	4 cut(s)	382, 551, 778, 947
Bme1390I	CCNGG	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	6 cut(s)	100, 328, 364, 577, 724, 973
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	1 cut(s)	520
BmtI	GCTAGC	1 cut(s)	608
Bpu14I	TTCGAA	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 585, 689, 981
Bse3DI	GCAATG	4 cut(s)	201, 236, 497, 893
BseBI	CCWGG	1 cut(s)	828
BseGI	GGATG	2 cut(s)	577, 931
BseLI	CCNNNNNNNGG	4 cut(s)	141, 585, 689, 981
BseMI	GCAATG	4 cut(s)	201, 236, 497, 893
BseMII	CTCAG	3 cut(s)	81, 510, 906
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	392, 561, 788, 957
BshFI	GGCC	2 cut(s)	83, 134
BshNI	GGYRCC	5 cut(s)	98, 326, 575, 722, 971
BsiHKCI	CYCGRG	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	141, 585, 689, 981
BsmAI	GTCTC	2 cut(s)	25, 211
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	83, 134
BsoBI	CYCGRG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	367, 763
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	923
BspANI	GGCC	2 cut(s)	83, 134
BspCNI	CTCAG	3 cut(s)	82, 511, 907
BspHI	TCATGA	2 cut(s)	385, 781
BspLI	GGNNCC	6 cut(s)	100, 328, 364, 577, 724, 973
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	2 cut(s)	284, 680
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	889
BspT104I	TTCGAA	1 cut(s)	444
BspT107I	GGYRCC	5 cut(s)	98, 326, 575, 722, 971
BsrDI	GCAATG	4 cut(s)	201, 236, 497, 893
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	756
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	2 cut(s)	350, 746
Bst6I	CTCTTC	3 cut(s)	19, 599, 889
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	525, 606, 921
BstDEI	CTNAG	5 cut(s)	90, 473, 519, 915, 999
BstF5I	GGATG	2 cut(s)	577, 931
BstHHI	GCGC	4 cut(s)	149, 265, 359, 755
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	25, 211
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 238, 333, 483, 508, 904
BstNI	CCWGG	1 cut(s)	828
BstSCI	CCNGG	1 cut(s)	826
BstSFI	CTRYAG	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	392, 561, 788, 957
BsuRI	GGCC	2 cut(s)	83, 134
BtsCI	GGATG	2 cut(s)	577, 931
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	4 cut(s)	288, 513, 516, 912
BveI	ACCTGC	2 cut(s)	284, 680
Cac8I	GCNNGC	3 cut(s)	525, 606, 921
CciI	TCATGA	2 cut(s)	385, 781
CfoI	GCGC	4 cut(s)	149, 265, 359, 755
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	99, 576, 679
CviAII	CATG	8 cut(s)	130, 167, 377, 386, 560, 773, 782, 956
CviQI	GTAC	3 cut(s)	99, 576, 679
DdeI	CTNAG	5 cut(s)	90, 473, 519, 915, 999
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	174
Eam1104I	CTCTTC	3 cut(s)	19, 599, 889
EarI	CTCTTC	3 cut(s)	19, 599, 889
Eco105I	TACGTA	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	367, 763
Eco32I	GATATC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	33
EcoRI	GAATTC	2 cut(s)	463, 859
EcoRII	CCWGG	1 cut(s)	826
EcoRV	GATATC	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	367, 763
FaeI	CATG	8 cut(s)	133, 170, 380, 389, 563, 776, 785, 959
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	8 cut(s)	129, 166, 376, 385, 559, 772, 781, 955
FauNDI	CATATG	1 cut(s)	967
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	381, 550, 777, 946
FokI	GGATG	2 cut(s)	584, 938
FriOI	GRGCYC	2 cut(s)	367, 763
Fsp4HI	GCNGC	4 cut(s)	381, 550, 777, 946
FspBI	CTAG	2 cut(s)	605, 686
GlaI	GCGC	4 cut(s)	148, 264, 358, 754
GluI	GCNGC	4 cut(s)	381, 550, 777, 946
HaeIII	GGCC	2 cut(s)	83, 134
HhaI	GCGC	4 cut(s)	149, 265, 359, 755
Hin1II	CATG	8 cut(s)	133, 170, 380, 389, 563, 776, 785, 959
Hin6I	GCGC	4 cut(s)	147, 263, 357, 753
HinP1I	GCGC	4 cut(s)	147, 263, 357, 753
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	288, 622, 820
Hpy188I	TCNGA	2 cut(s)	398, 870
Hpy188III	TCNNGA	4 cut(s)	386, 431, 782, 809
Hpy8I	GTNNAC	3 cut(s)	288, 622, 820
HpyAV	CCTTC	4 cut(s)	128, 263, 476, 872
HpyCH4III	ACNGT	2 cut(s)	350, 746
HpyCH4IV	ACGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 238, 333, 483, 508, 904
HpyF3I	CTNAG	5 cut(s)	90, 473, 519, 915, 999
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	8 cut(s)	133, 170, 380, 389, 563, 776, 785, 959
HspAI	GCGC	4 cut(s)	147, 263, 357, 753
KpnI	GGTACC	2 cut(s)	102, 579
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	4 cut(s)	392, 561, 788, 957
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	605, 686
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	158, 350, 746
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	6, 257, 332, 586, 728, 876
MhlI	GDGCHC	2 cut(s)	367, 763
MluCI	AATT	5 cut(s)	368, 463, 512, 764, 859
MnlI	CCTC	7 cut(s)	22, 87, 124, 181, 461, 589, 985
MseI	TTAA	2 cut(s)	173, 282
MslI	CAYNNNNRTG	1 cut(s)	786
MspR9I	CCNGG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	6 cut(s)	131, 238, 333, 483, 508, 904
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	8 cut(s)	133, 170, 380, 389, 563, 776, 785, 959
NlaIV	GGNNCC	6 cut(s)	100, 328, 364, 577, 724, 973
NspV	TTCGAA	1 cut(s)	444
PagI	TCATGA	2 cut(s)	385, 781
PaqCI	CACCTGC	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	889
PctI	GAATGC	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	382, 551, 778, 947
Ppu21I	YACGTR	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	6 cut(s)	100, 328, 364, 577, 724, 973
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	100, 577, 680
RsaNI	GTAC	3 cut(s)	99, 576, 679
RseI	CAYNNNNRTG	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	2 cut(s)	173, 282
SatI	GCNGC	4 cut(s)	381, 550, 777, 946
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	828
SduI	GDGCHC	2 cut(s)	367, 763
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	786
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	5 cut(s)	368, 463, 512, 764, 859
SsiI	CCGC	1 cut(s)	923
SspMI	CTAG	2 cut(s)	605, 686
StyD4I	CCNGG	1 cut(s)	826
TaaI	ACNGT	2 cut(s)	350, 746
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	444, 840
TasI	AATT	5 cut(s)	368, 463, 512, 764, 859
Tru1I	TTAA	2 cut(s)	173, 282
Tru9I	TTAA	2 cut(s)	173, 282
TscAI	CASTG	4 cut(s)	295, 513, 523, 919
TseI	GCWGC	4 cut(s)	380, 549, 776, 945
TspRI	CASTG	4 cut(s)	295, 513, 523, 919
XapI	RAATTY	2 cut(s)	463, 859
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	2 cut(s)	605, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.