Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

8373312 .. 8376317

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATATACCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCGTCCAGATAAGTGAAGGGGAATCTATAAATGATGGAGGAATTAGATTAAAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAGAAGAAATGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGCCGGGTGTACTGGAGGAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGGACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGTATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

6.2

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	433, 449
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	131, 183
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	252, 295, 388
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	6 cut(s)	42, 121, 374, 427, 446, 452
AluI	AGCT	6 cut(s)	42, 121, 374, 427, 446, 452
AlwI	GGATC	2 cut(s)	433, 449
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	131, 183
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	25, 403, 477
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	86, 272, 470
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	206
BfaI	CTAG	2 cut(s)	305, 335
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	165, 206
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	165, 206
BpmI	CTGGAG	2 cut(s)	235, 468
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	218, 237
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseNI	ACTGG	2 cut(s)	218, 237
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	204
BshTI	ACCGGT	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	11, 205
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	15, 178, 415, 438, 454
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	433, 449
BspTI	CTTAAG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	218, 237
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	15, 178, 415, 438, 454
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstKTI	GATC	5 cut(s)	18, 181, 418, 441, 457
BstMBI	GATC	5 cut(s)	15, 178, 415, 438, 454
BstNI	CCWGG	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	163, 204
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	3 cut(s)	125, 200, 410
CviJI	RGCY	8 cut(s)	42, 121, 204, 223, 374, 427, 446, 452
CviKI_1	RGCY	8 cut(s)	42, 121, 204, 223, 374, 427, 446, 452
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	5 cut(s)	17, 180, 417, 440, 456
DpnII	GATC	5 cut(s)	15, 178, 415, 438, 454
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	128, 203, 413
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	3 cut(s)	124, 199, 409
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	305, 335
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	2 cut(s)	235, 468
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	11, 205
Hin1II	CATG	3 cut(s)	128, 203, 413
HinfI	GANTC	3 cut(s)	80, 288, 338
HpaII	CCGG	2 cut(s)	11, 205
HphI	GGTGA	3 cut(s)	25, 403, 477
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	343, 443
Hpy188III	TCNNGA	3 cut(s)	64, 292, 305
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	68, 311, 382, 474
Hsp92II	CATG	3 cut(s)	128, 203, 413
Kzo9I	GATC	5 cut(s)	15, 178, 415, 438, 454
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	305, 335
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	5 cut(s)	17, 180, 417, 440, 456
MboI	GATC	5 cut(s)	15, 178, 415, 438, 454
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	4 cut(s)	26, 99, 131, 183
MnlI	CCTC	7 cut(s)	25, 89, 121, 210, 213, 301, 330
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	44, 107, 117
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	2 cut(s)	11, 205
MspR9I	CCNGG	2 cut(s)	165, 206
MvaI	CCWGG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	5 cut(s)	15, 178, 415, 438, 454
NlaIII	CATG	3 cut(s)	128, 203, 413
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	80, 288, 338
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	317
PspPPI	RGGWCCY	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	44, 107, 117
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	15, 178, 415, 438, 454
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	165, 206
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	4 cut(s)	26, 99, 131, 183
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	2 cut(s)	305, 335
StyD4I	CCNGG	2 cut(s)	163, 204
StyI	CCWWGG	1 cut(s)	489
TasI	AATT	4 cut(s)	26, 99, 131, 183
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	80, 288, 338
Tru1I	TTAA	3 cut(s)	44, 107, 117
Tru9I	TTAA	3 cut(s)	44, 107, 117
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	131, 183
XbaI	TCTAGA	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	305, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.