Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

54446914 .. 54449916

Gene Structure 3003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATATATCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCTTCCAGATAAGTGGAGGGGAATCTATAAATGATGGAGGAATTAGATTAAAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAAGAGAAGTGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGCCTGGTGTACTGGAGGAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

6.59

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	433, 449
AcsI	RAATTY	2 cut(s)	131, 183
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	252, 295, 388
AjnI	CCWGG	2 cut(s)	163, 204
AluBI	AGCT	6 cut(s)	42, 121, 374, 427, 446, 452
AluI	AGCT	6 cut(s)	42, 121, 374, 427, 446, 452
AlwI	GGATC	2 cut(s)	433, 449
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	131, 183
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	3 cut(s)	25, 403, 477
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	86, 272, 470
BciT130I	CCWGG	2 cut(s)	165, 206
BciVI	GTATCC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	305, 335
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	165, 206
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	165, 206
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	2 cut(s)	235, 468
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	218, 237
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	165, 206
BseDI	CCNNGG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseNI	ACTGG	2 cut(s)	218, 237
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	15, 178, 415, 438, 454
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	433, 449
BspTI	CTTAAG	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	218, 237
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	5 cut(s)	15, 178, 415, 438, 454
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	165, 206
BstAFI	CTTAAG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstKTI	GATC	5 cut(s)	18, 181, 418, 441, 457
BstMBI	GATC	5 cut(s)	15, 178, 415, 438, 454
BstNI	CCWGG	2 cut(s)	165, 206
BstPI	GGTNACC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	163, 204
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	125, 200, 410
CviJI	RGCY	8 cut(s)	42, 121, 204, 223, 374, 427, 446, 452
CviKI_1	RGCY	8 cut(s)	42, 121, 204, 223, 374, 427, 446, 452
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	5 cut(s)	17, 180, 417, 440, 456
DpnII	GATC	5 cut(s)	15, 178, 415, 438, 454
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	163, 204
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	128, 203, 413
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	3 cut(s)	124, 199, 409
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	305, 335
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	2 cut(s)	235, 468
HaeIII	GGCC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	128, 203, 413
HinfI	GANTC	3 cut(s)	80, 288, 338
HphI	GGTGA	3 cut(s)	25, 403, 477
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	343, 443
Hpy188III	TCNNGA	3 cut(s)	64, 292, 305
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	311, 382, 474
HpyCH4V	TGCA	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	128, 203, 413
Kzo9I	GATC	5 cut(s)	15, 178, 415, 438, 454
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	8 cut(s)	77, 150, 177, 191, 199, 218, 218, 432
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	305, 335
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	5 cut(s)	17, 180, 417, 440, 456
MboI	GATC	5 cut(s)	15, 178, 415, 438, 454
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	4 cut(s)	26, 99, 131, 183
MnlI	CCTC	8 cut(s)	25, 68, 89, 121, 210, 213, 301, 330
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	44, 107, 117
MspCI	CTTAAG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	165, 206
MvaI	CCWGG	2 cut(s)	165, 206
NdeII	GATC	5 cut(s)	15, 178, 415, 438, 454
NlaIII	CATG	3 cut(s)	128, 203, 413
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	80, 288, 338
PkrI	GCNGC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	163, 204
PspEI	GGTNACC	1 cut(s)	483
PspGI	CCWGG	2 cut(s)	163, 204
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	317
PspPPI	RGGWCCY	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	44, 107, 117
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	15, 178, 415, 438, 454
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	165, 206
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	4 cut(s)	26, 99, 131, 183
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	2 cut(s)	305, 335
StyD4I	CCNGG	2 cut(s)	163, 204
StyI	CCWWGG	1 cut(s)	489
TasI	AATT	4 cut(s)	26, 99, 131, 183
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	80, 288, 338
Tru1I	TTAA	3 cut(s)	44, 107, 117
Tru9I	TTAA	3 cut(s)	44, 107, 117
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	131, 183
XbaI	TCTAGA	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	305, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.