Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Forward (+)

52476038 .. 52477763

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATCAAAGCTATTCTTGTACTGGAGGAGGTAGGTTTAGGGGAAGATGGGTCAGAAGAAACAGTTTTTCTTTTGCAACCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGTAGGCTTCTGCGACTGGATAAACAATCATTTACAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTTTAGAGGGTAAAGGACCTCATATCAAGAAACTAGAATCAGACATTACTTTCCATATTGGAACGCAAGAAGCTGATCTTTCTTTGAAGGTGAATAGTGCTACTTATCTTGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGACTTGCAGATATATGGGTACAGAATGGCACTGTGGGCAGAGCATTTTGGACTTGTTGAAGAATGTTTCAATCAGCCAGAGTCTTGAATGTGTTCAAAGGGTAAGGTCATTGGGTGAGCAGAACTGGAGTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

188

Amino Acids

21.21

Weight (kDa)

5.57

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	13 - 67	2e-09	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	370, 386
AfaI	GTAC	2 cut(s)	21, 448
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	6 cut(s)	232, 325, 487, 498, 515, 524
AluBI	AGCT	6 cut(s)	11, 87, 311, 364, 383, 389
AluI	AGCT	6 cut(s)	11, 87, 311, 364, 383, 389
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	370, 386
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	340, 414, 554
AvaII	GGWCC	1 cut(s)	254
BccI	CCATC	4 cut(s)	41, 113, 209, 407
BciVI	GTATCC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	272, 565
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	2 cut(s)	44, 405
BsaBI	GATNNNNATC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	3 cut(s)	27, 174, 557
Bse8I	GATNNNNATC	1 cut(s)	357
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	27, 174, 557
BseRI	GAGGAG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	106
Bsp143I	GATC	5 cut(s)	3, 313, 352, 375, 391
BspACI	CCGC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	370, 386
BsrI	ACTGG	3 cut(s)	27, 174, 557
BssMI	GATC	5 cut(s)	3, 313, 352, 375, 391
Bst4CI	ACNGT	4 cut(s)	64, 136, 153, 461
BstEII	GGTNACC	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	5 cut(s)	6, 316, 355, 378, 394
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	5 cut(s)	3, 313, 352, 375, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstPI	GGTNACC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	20, 447
CviJI	RGCY	8 cut(s)	11, 87, 160, 311, 364, 383, 389, 504
CviKI_1	RGCY	8 cut(s)	11, 87, 160, 311, 364, 383, 389, 504
CviQI	GTAC	2 cut(s)	20, 447
DpnI	GATC	5 cut(s)	5, 315, 354, 377, 393
DpnII	GATC	5 cut(s)	3, 313, 352, 375, 391
EciI	GGCGGA	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	420
FaiI	YATR	9 cut(s)	132, 203, 205, 213, 261, 294, 411, 441, 443
FalI	AAGNNNNNCTT	3 cut(s)	32, 300, 332
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	92
FspBI	CTAG	2 cut(s)	272, 565
GsuI	CTGGAG	2 cut(s)	44, 405
HinfI	GANTC	4 cut(s)	225, 275, 508, 556
HphI	GGTGA	3 cut(s)	340, 414, 554
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	55, 280, 380
Hpy188III	TCNNGA	3 cut(s)	229, 265, 512
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	319, 411
HpyCH4III	ACNGT	4 cut(s)	64, 136, 153, 461
HpyCH4V	TGCA	4 cut(s)	76, 114, 358, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 313, 352, 375, 391
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	5 cut(s)	8, 155, 369, 518, 538
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	272, 565
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	5 cut(s)	5, 315, 354, 377, 393
MboI	GATC	5 cut(s)	3, 313, 352, 375, 391
MboII	GAAGA	3 cut(s)	56, 68, 499
MflI	RGATCY	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	517, 565
MnlI	CCTC	4 cut(s)	19, 22, 238, 267
MroXI	GAANNNNTTC	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	5 cut(s)	3, 313, 352, 375, 391
NmuCI	GTSAC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	225, 275
PleI	GAGTC	2 cut(s)	516, 564
PpsI	GAGTC	2 cut(s)	516, 564
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	21, 448
RsaNI	GTAC	2 cut(s)	20, 447
Sau3AI	GATC	5 cut(s)	3, 313, 352, 375, 391
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	517, 565
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	254
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	272, 565
TaaI	ACNGT	4 cut(s)	64, 136, 153, 461
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	225, 275
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	420
TspRI	CASTG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	2 cut(s)	272, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.