Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

17824184 .. 17827179

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAATATACCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCGTCCAGATAAGTGAAGGGGAATCTATAAATGATGGAGGAATTAGATTAAAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAGAAGAAATGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGCCGGGTGTACTGGAGGAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGTGCCAATCACATGGCTGAAATTTTTACAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGTATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

175

Amino Acids

20.03

Weight (kDa)

6.21

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	463, 479
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	131, 183, 329
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	252, 295, 418
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	6 cut(s)	42, 121, 404, 457, 476, 482
AluI	AGCT	6 cut(s)	42, 121, 404, 457, 476, 482
AlwI	GGATC	2 cut(s)	463, 479
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	3 cut(s)	131, 183, 329
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	25, 433, 507
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	3 cut(s)	86, 272, 500
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	206
BfaI	CTAG	2 cut(s)	305, 365
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	2 cut(s)	165, 206
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	162, 312
BmrFI	CCNGG	2 cut(s)	165, 206
BpmI	CTGGAG	2 cut(s)	235, 498
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	218, 237
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseNI	ACTGG	2 cut(s)	218, 237
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	310
BshTI	ACCGGT	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	11, 205
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	15, 178, 445, 468, 484
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	162, 312
BspPI	GGATC	2 cut(s)	463, 479
BspT107I	GGYRCC	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	218, 237
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	5 cut(s)	15, 178, 445, 468, 484
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	513
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstKTI	GATC	5 cut(s)	18, 181, 448, 471, 487
BstMBI	GATC	5 cut(s)	15, 178, 445, 468, 484
BstNI	CCWGG	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	513
BstSCI	CCNGG	2 cut(s)	163, 204
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	4 cut(s)	125, 200, 321, 440
CviJI	RGCY	9 cut(s)	42, 121, 204, 223, 325, 404, 457, 476, 482
CviKI_1	RGCY	9 cut(s)	42, 121, 204, 223, 325, 404, 457, 476, 482
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	5 cut(s)	17, 180, 447, 470, 486
DpnII	GATC	5 cut(s)	15, 178, 445, 468, 484
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	4 cut(s)	128, 203, 324, 443
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	4 cut(s)	124, 199, 320, 439
Fnu4HI	GCNGC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	305, 365
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	2 cut(s)	235, 498
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	11, 205
Hin1II	CATG	4 cut(s)	128, 203, 324, 443
HinfI	GANTC	3 cut(s)	80, 288, 368
HpaII	CCGG	2 cut(s)	11, 205
HphI	GGTGA	3 cut(s)	25, 433, 507
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	373, 473
Hpy188III	TCNNGA	3 cut(s)	64, 292, 305
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	68, 311, 412, 504
Hsp92II	CATG	4 cut(s)	128, 203, 324, 443
Kzo9I	GATC	5 cut(s)	15, 178, 445, 468, 484
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	305, 365
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	5 cut(s)	17, 180, 447, 470, 486
MboI	GATC	5 cut(s)	15, 178, 445, 468, 484
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	5 cut(s)	26, 99, 131, 183, 329
MnlI	CCTC	7 cut(s)	25, 89, 121, 210, 213, 301, 360
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	44, 107, 117
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	2 cut(s)	11, 205
MspR9I	CCNGG	2 cut(s)	165, 206
MvaI	CCWGG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	5 cut(s)	15, 178, 445, 468, 484
NlaIII	CATG	4 cut(s)	128, 203, 324, 443
NlaIV	GGNNCC	2 cut(s)	162, 312
NmuCI	GTSAC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	80, 288, 368
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	162, 312
PspPI	GGNCC	1 cut(s)	347
PspPPI	RGGWCCY	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	44, 107, 117
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	5 cut(s)	15, 178, 445, 468, 484
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	165, 206
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	5 cut(s)	26, 99, 131, 183, 329
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	2 cut(s)	305, 365
StyD4I	CCNGG	2 cut(s)	163, 204
StyI	CCWWGG	1 cut(s)	519
TasI	AATT	5 cut(s)	26, 99, 131, 183, 329
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	80, 288, 368
Tru1I	TTAA	3 cut(s)	44, 107, 117
Tru9I	TTAA	3 cut(s)	44, 107, 117
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	3 cut(s)	131, 183, 329
XbaI	TCTAGA	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	305, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.