Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

26932012 .. 26963100

Gene Structure 31089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG271400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTGTTGACACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATTCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAGAATACAGTGAGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAGTTTCGCTTTTGCAACCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACAGTACTTTCCATATTGGAAAGCAAGAAGCTGAACTTTCTTTAAAGGTGAATAGTGCTGCTTATCATGGAGATCTGCATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAAATTATGATGGAAGGTCACCCTTGAGAGCTTATGCAAAAACAAATGAAGGTGCATTAAAGGAAAGCAGCATGCAAGCCCTTGGTGAAATTGCTACACAACTGAATAAAAAGAACTGGAATTTGAGTGACCCATGTAGCAATATTCCAACTTTCTCAATCCCACATACGGATCAGTACAATAACACCCTCTTCTGCAACTGTCATTTCCCTGGCAATGCGTGCCATGTCGAAACCATTTTTCTTGTTGGTCAGGACCTGGATGGTGTGCTTCCACCATCACTGGTGAAGCTACCTTACCTTAAGGAACTCTACCTTCGAGCAAACAATCTCACTGGAGAGTTGCCTGTGGCTCTTACTAATTTGACCAAGCTAAAAACACTATATTTGACAAATAATTGGCTTACTGGGTTTCCGGAGTGGATCAAAAACAGAGATAGCTACAACGCAATAGATCTTTCTTACAATAATTTCTCCAAGATTTCTGTCCCAACGACATGCCAAGATACCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

338

Amino Acids

37.86

Weight (kDa)

5.53

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	46 - 100	2e-09	Cyclic nucleotide-binding domain
LRR_8	PF13855	244 - 300	4.8e-06	Leucine rich repeat
LRR_4	PF12799	268 - 306	3.1e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	916
AciI	CCGC	1 cut(s)	319
AclWI	GGATC	5 cut(s)	157, 469, 485, 681, 932
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	2 cut(s)	385, 680
AfiI	CCNNNNNNNGG	2 cut(s)	343, 670
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	2 cut(s)	288, 331
AjnI	CCWGG	2 cut(s)	712, 759
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	5 cut(s)	157, 469, 485, 681, 932
AlwNI	CAGNNNCTG	1 cut(s)	760
Aor13HI	TCCGGA	1 cut(s)	916
ApeKI	GCWGC	2 cut(s)	437, 570
ApoI	RAATTY	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	353, 757
AsuHPI	GGTGA	4 cut(s)	439, 513, 599, 799
AvaII	GGWCC	2 cut(s)	353, 757
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbvI	GCAGC	2 cut(s)	424, 582
BccI	CCATC	6 cut(s)	140, 212, 308, 506, 758, 787
BciT130I	CCWGG	2 cut(s)	714, 761
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	62, 341, 371
BfrI	CTTAAG	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	2 cut(s)	451, 955
BisI	GCNGC	2 cut(s)	438, 571
BlsI	GCNGC	2 cut(s)	439, 572
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	714, 761
Bme18I	GGWCC	2 cut(s)	353, 757
BmgT120I	GGNCC	2 cut(s)	353, 757
BmrFI	CCNGG	2 cut(s)	714, 761
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	1 cut(s)	466
BmuI	ACTGGG	1 cut(s)	918
BpmI	CTGGAG	2 cut(s)	504, 858
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	15, 547
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	583, 712
BsaWI	WCCGGW	1 cut(s)	916
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 670
Bse1I	ACTGG	5 cut(s)	273, 623, 789, 841, 913
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	2 cut(s)	714, 761
BseDI	CCNNGG	2 cut(s)	583, 712
BseGI	GGATG	2 cut(s)	204, 769
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	343, 670
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	5 cut(s)	273, 623, 789, 841, 913
BseRI	GAGGAG	2 cut(s)	137, 140
BseXI	GCAGC	2 cut(s)	424, 582
BsgI	GTGCAG	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	2 cut(s)	343, 670
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	974
Bsp13I	TCCGGA	1 cut(s)	916
Bsp143I	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	916
BspPI	GGATC	5 cut(s)	157, 469, 485, 681, 932
BspTI	CTTAAG	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	5 cut(s)	273, 623, 789, 841, 913
BssECI	CCNNGG	2 cut(s)	583, 712
BssMI	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	714, 761
Bst4CI	ACNGT	6 cut(s)	119, 163, 235, 252, 383, 704
Bst6I	CTCTTC	1 cut(s)	698
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	2 cut(s)	23, 723
BstC8I	GCNNGC	4 cut(s)	257, 575, 579, 724
BstDEI	CTNAG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	204, 769
BstKTI	GATC	8 cut(s)	106, 152, 454, 477, 493, 676, 927, 958
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 723
BstNI	CCWGG	2 cut(s)	714, 761
BstNSI	RCATGY	2 cut(s)	577, 1002
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	712, 759
BstV1I	GCAGC	2 cut(s)	424, 582
BstX2I	RGATCY	2 cut(s)	451, 955
BstYI	RGATCY	2 cut(s)	451, 955
BsuI	GTATCC	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	204, 769
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 124, 782, 834
Cac8I	GCNNGC	4 cut(s)	257, 575, 579, 724
CaiI	CAGNNNCTG	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	353, 757
Csp6I	GTAC	2 cut(s)	384, 679
CviAII	CATG	5 cut(s)	446, 574, 636, 728, 999
CviQI	GTAC	2 cut(s)	384, 679
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	8 cut(s)	105, 151, 453, 476, 492, 675, 926, 957
DpnII	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
DraI	TTTAAA	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	353, 757
Eco91I	GGTNACC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	353, 757
EcoO65I	GGTNACC	1 cut(s)	519
EcoRII	CCWGG	2 cut(s)	712, 759
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	5 cut(s)	449, 577, 639, 731, 1002
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	974
FatI	CATG	5 cut(s)	445, 573, 635, 727, 998
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	438, 571
FokI	GGATG	2 cut(s)	191, 776
Fsp4HI	GCNGC	2 cut(s)	438, 571
FspBI	CTAG	3 cut(s)	62, 341, 371
GluI	GCNGC	2 cut(s)	438, 571
GsuI	CTGGAG	2 cut(s)	504, 858
HapII	CCGG	1 cut(s)	917
Hin1II	CATG	5 cut(s)	449, 577, 639, 731, 1002
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	324, 374
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	4 cut(s)	439, 513, 599, 799
Hpy166II	GTNNAC	2 cut(s)	10, 248
Hpy188I	TCNGA	5 cut(s)	99, 108, 154, 379, 479
Hpy188III	TCNNGA	4 cut(s)	328, 341, 755, 917
Hpy8I	GTNNAC	2 cut(s)	10, 248
HpyAV	CCTTC	4 cut(s)	347, 510, 545, 827
HpyCH4III	ACNGT	6 cut(s)	119, 163, 235, 252, 383, 704
HpyCH4V	TGCA	9 cut(s)	17, 175, 213, 255, 457, 539, 557, 577, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 723
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	449, 577, 639, 731, 1002
Kpn2I	TCCGGA	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	424, 582
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	62, 341, 371
MaeIII	GTNAC	2 cut(s)	519, 629
MalI	GATC	8 cut(s)	105, 151, 453, 476, 492, 675, 926, 957
MboI	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
MboII	GAAGA	3 cut(s)	155, 167, 685
MflI	RGATCY	2 cut(s)	451, 955
MluCI	AATT	6 cut(s)	505, 591, 622, 862, 898, 970
MmeI	TCCRAC	1 cut(s)	674
MnlI	CCTC	7 cut(s)	61, 115, 118, 121, 337, 366, 701
MroI	TCCGGA	1 cut(s)	916
MseI	TTAA	3 cut(s)	422, 560, 804
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	714, 761
MvaI	CCWGG	2 cut(s)	714, 761
MwoI	GCNNNNNNNGC	2 cut(s)	23, 723
NdeII	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
NlaIII	CATG	5 cut(s)	449, 577, 639, 731, 1002
NmuCI	GTSAC	2 cut(s)	519, 629
NspI	RCATGY	2 cut(s)	577, 1002
PaeI	GCATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	324, 374
PkrI	GCNGC	2 cut(s)	439, 572
PpuMI	RGGWCCY	2 cut(s)	353, 757
Psp5II	RGGWCCY	2 cut(s)	353, 757
Psp6I	CCWGG	2 cut(s)	712, 759
PspEI	GGTNACC	1 cut(s)	519
PspGI	CCWGG	2 cut(s)	712, 759
PspPI	GGNCC	2 cut(s)	353, 757
PspPPI	RGGWCCY	2 cut(s)	353, 757
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	451, 955
RsaI	GTAC	2 cut(s)	385, 680
RsaNI	GTAC	2 cut(s)	384, 679
SaqAI	TTAA	3 cut(s)	422, 560, 804
SatI	GCNGC	2 cut(s)	438, 571
Sau3AI	GATC	8 cut(s)	103, 149, 451, 474, 490, 673, 924, 955
Sau96I	GGNCC	2 cut(s)	353, 757
ScaI	AGTACT	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	714, 761
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	2 cut(s)	353, 757
SmlI	CTYRAG	3 cut(s)	30, 526, 803
SmoI	CTYRAG	3 cut(s)	30, 526, 803
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	6 cut(s)	505, 591, 622, 862, 898, 970
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	62, 341, 371
StyD4I	CCNGG	2 cut(s)	712, 759
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	6 cut(s)	119, 163, 235, 252, 383, 704
TaqI	TCGA	2 cut(s)	732, 820
TasI	AATT	6 cut(s)	505, 591, 622, 862, 898, 970
TatI	WGTACW	2 cut(s)	383, 678
TfiI	GAWTC	2 cut(s)	324, 374
Tru1I	TTAA	3 cut(s)	422, 560, 804
Tru9I	TTAA	3 cut(s)	422, 560, 804
TscAI	CASTG	4 cut(s)	19, 124, 789, 841
TseFI	GTSAC	2 cut(s)	519, 629
TseI	GCWGC	2 cut(s)	437, 570
Tsp45I	GTSAC	2 cut(s)	519, 629
TspDTI	ATGAA	1 cut(s)	564
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	4 cut(s)	19, 124, 789, 841
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	353, 757
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	622
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	2 cut(s)	577, 1002
XspI	CTAG	3 cut(s)	62, 341, 371
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.