Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016996

Physical Location & Seq

Genomic Coordinates Reverse (-)

13460893 .. 13464232

Gene Structure 3340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAATATACCGGTGATCTCGCAGAAATTAGAGGGGAGTAGCTTAAGTCAGTCATCTTTCGTCCAGATAAGTGAAGGGGAATCTATAAATGATGGAGGAATTAGATTAAAGGTTATTAAGCTACATGAGGAATTTTTTCTCCCAGAAGAAATGATAATGGAACCTGGAAATGTGGTAGATCAAATTTATTTTGTCTGTCATGGCCGGGTGTACTGCAATAACAAGGATAGTACGGAGGAGGTGGGTTTAGGGGAAGATGGATCAGAAGAAACAGTTTCGCTTTTGCAATCTAACAGCTCATTTGGACAAGTCTCCATCCTTTGCAACATTCCCCAACCTTATACAGTTAGGGTGTGTGAACTGTGCAGGCTTCTGCGACTGGATAAACAATCATTTTCAAGTATCCTTGACATATACTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGTAAAGGACCTCATATCAAGCAACTAGAATCAGACATTACTTTCCATATTGGAAAGCAAGAAGCTGGACTTTCTTTGAAGGTGAATAGTGCTGCTTATCATGGAGATCTGTATCAGCTAAAATGTTTGATCCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCCTTGACTTGCAGATATATGGGTACAGAATGGCACTGTGGGCAGAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

228

Amino Acids

25.52

Weight (kDa)

5.16

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	45 - 137	1.2e-12	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016996)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0456031 RchiOBHm_Chr4g0427191
rosa_multiflora	Rmu_sc0000996.1_g000002
rosa_rugosa	Rorug05G0370900
rosa_samantha	Rh2AG183400 Rh2AG183500 Rh2DG189900 Rh5AG337500 Rh6AG090600 Rh6CG078400 Rh6DG074200 Rh7AG254700 Rh7BG174700 Rh7CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	3 cut(s)	268, 580, 596
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	131, 183
AfaI	GTAC	3 cut(s)	212, 232, 658
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	399, 442, 535
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	7 cut(s)	42, 121, 297, 521, 574, 593, 599
AluI	AGCT	7 cut(s)	42, 121, 297, 521, 574, 593, 599
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	268, 580, 596
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	131, 183
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	25, 550, 624
AvaII	GGWCC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	5 cut(s)	86, 251, 323, 419, 617
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	452, 482
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	2 cut(s)	165, 206
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	165, 206
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	535
BsgI	GTGCAG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	204
BshTI	ACCGGT	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	11, 205
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	204
Bsp143I	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	268, 580, 596
BspTI	CTTAAG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	4 cut(s)	274, 346, 363, 671
BstAFI	CTTAAG	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	368
BstEII	GGTNACC	1 cut(s)	630
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	6 cut(s)	18, 181, 263, 565, 588, 604
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	163, 204
BstV1I	GCAGC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	211, 231, 657
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	3 cut(s)	125, 200, 557
CviJI	RGCY	9 cut(s)	42, 121, 204, 297, 370, 521, 574, 593, 599
CviKI_1	RGCY	9 cut(s)	42, 121, 204, 297, 370, 521, 574, 593, 599
CviQI	GTAC	3 cut(s)	211, 231, 657
DpnI	GATC	6 cut(s)	17, 180, 262, 564, 587, 603
DpnII	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	128, 203, 560
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	3 cut(s)	124, 199, 556
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	452, 482
GluI	GCNGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	11, 205
Hin1II	CATG	3 cut(s)	128, 203, 560
HinfI	GANTC	3 cut(s)	80, 435, 485
HpaII	CCGG	2 cut(s)	11, 205
HphI	GGTGA	3 cut(s)	25, 550, 624
Hpy166II	GTNNAC	2 cut(s)	211, 359
Hpy188I	TCNGA	3 cut(s)	265, 490, 590
Hpy188III	TCNNGA	3 cut(s)	64, 439, 452
Hpy8I	GTNNAC	2 cut(s)	211, 359
HpyAV	CCTTC	4 cut(s)	68, 458, 529, 621
HpyCH4III	ACNGT	4 cut(s)	274, 346, 363, 671
HpyCH4V	TGCA	5 cut(s)	216, 286, 324, 366, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
Hsp92II	CATG	3 cut(s)	128, 203, 560
Kzo9I	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	452, 482
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	6 cut(s)	17, 180, 262, 564, 587, 603
MboI	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
MboII	GAAGA	3 cut(s)	158, 266, 278
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	4 cut(s)	26, 99, 131, 183
MnlI	CCTC	7 cut(s)	25, 89, 121, 229, 232, 448, 477
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	3 cut(s)	44, 107, 117
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	2 cut(s)	11, 205
MspR9I	CCNGG	2 cut(s)	165, 206
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	673
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
NlaIII	CATG	3 cut(s)	128, 203, 560
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	80, 435, 485
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	550
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	464
PspPPI	RGGWCCY	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	3 cut(s)	212, 232, 658
RsaNI	GTAC	3 cut(s)	211, 231, 657
SaqAI	TTAA	3 cut(s)	44, 107, 117
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	6 cut(s)	15, 178, 260, 562, 585, 601
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	165, 206
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	4 cut(s)	26, 99, 131, 183
SsiI	CCGC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	452, 482
StyD4I	CCNGG	2 cut(s)	163, 204
TaaI	ACNGT	4 cut(s)	274, 346, 363, 671
TasI	AATT	4 cut(s)	26, 99, 131, 183
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	80, 435, 485
Tru1I	TTAA	3 cut(s)	44, 107, 117
Tru9I	TTAA	3 cut(s)	44, 107, 117
TscAI	CASTG	1 cut(s)	674
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	674
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	131, 183
XbaI	TCTAGA	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	452, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.