RchiOBHm_Chr3g0460281

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
8440621 .. 8444396
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42681

Sequence Viewer

Length: 1437 bp
ATGGTTTTATCGAAGCTACCTGATTCGTCCAAGACCCGCAAGTGCAATCCAGTTCAGACCCAGTTGCTTTTTCCAATGGGCCAGATGGATGCTGTTGTGTCCGATCACGTTGAGCTTGACTTTTCAGATGTATTTGGTCCTGTACCAGTCAATGCCCCTGTAGACTCGGCTAATTCTGCCTCTGTTGAAGATGGCGCTGACCATATATATGATGATCCTGTCGTCATTCACAACCGATCACATTCTTTGGTCGGTCCTTCATCGTATGTAAGCCATTCATTGAAGCTCAGCAAACTCACTATTCATGACACAGAAGATTCAGTGGATCTGGTAGAGTGTCTCCATGAAGATACCGTGAAAGAATCTCAGGAACCTTTTATTGGTGATGTTGTCCTTGGAAAACCTCTACAAGTTGTTGAGGAGAATTCCATGAAGACTGAGAGTGTAGGCATTGAAGATTTTGAGGTTTTGAAGGTTGTTGGGCAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAGAAGGGGACATCAGAAATATATGCTATGAAGGTCATGCGAAAGGATAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATATTAACAAAAGTTGATCATCCGTTCATTATCCAGCTTAGATACTCATTCCAAACCAAATACAGACTTTATCTCGTGCTGGATTTTGTCAATGGAGGTCACCTTTTCTTTCAGCTCTACCACCATGGCCTTTTCAGGGAAGAGCTGGCACGAATATATGCTGCGGAGATTGTTTCTGCTGTATCTCACCTCCATGCAAATGGCATAATGCATAGGGATCTTAAACCTGAAAATATCTTATTGGATGCAGATGGCCATGCCATGTTGACTGATTTTGGGCTTGCAAAGAAATTTGACGAAAATACAAGATCTAATTCTCTATGTGGAACTGTAGAATACATGGCACCTGAAATAATTCAGGGAAAGGGCCATGATAAGGCAGCAGATTGGTGGAGTGTGGGAGTTCTATTGTTTGAGATGCTTACTGGAAAGCCTCCTTTTACGGGGAACCGTCAGAAAATTCAACAGAAGATAGTTAAGGACAAAGTCAAGTTGCCAACCTTTTTAACAAGTGAAGCACATTCTCTGGTGAAAGCGCTATTAGAGAAGGACACCAGCAAGCGCCTGGGTTGTGGACCTCTGGGAAGTGATGAAATCAAGCGCCACAAATGGTTCAAGCCAATTAATTGGAAGAAATTGGATGCTCGCGAAATCCAACCAAGCTTCCGACCTGATGTTGCTGGGCAGCACTGCATCGCCAACTTTGAGAAATGCTGGACTGACATGCCACTTGTGGACTCCCCAGCTGCTAGTCCGAATGCTTCTGGAAACCCGTTCTCAGGCTTTAGTTATGTTAGGCCTGCGGTCTCTTTTCTTCAGAACTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

53.61

Weight (kDa)

6.29

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 154 - 409 9.9e-77 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 155 - 392 4.1e-36 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 228 - 309 9.3e-07 ABC1 atypical kinase-like domain
Kinase-like PF14531 252 - 392 1.1e-07 Kinase-like
Pkinase_fungal PF17667 261 - 333 2.9e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 1260
AciI CCGC 3 cut(s) 37, 776, 1415
AclWI GGATC 3 cut(s) 209, 333, 837
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 3 cut(s) 424, 902, 1071
AcuI CTGAAG 1 cut(s) 1412
AfaI GTAC 1 cut(s) 144
AfeI AGCGCT 1 cut(s) 1149
AfiI CCNNNNNNNGG 5 cut(s) 380, 748, 988, 1055, 1391
AgsI TTSAA 6 cut(s) 188, 283, 455, 472, 1076, 1228
AjnI CCWGG 1 cut(s) 1176
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 9 cut(s) 16, 115, 286, 602, 649, 727, 757, 1275, 1358
AluI AGCT 9 cut(s) 16, 115, 286, 602, 649, 727, 757, 1275, 1358
Alw26I GTCTC 2 cut(s) 344, 1423
AlwI GGATC 3 cut(s) 209, 333, 837
Aor51HI AGCGCT 1 cut(s) 1149
AoxI GGCC 5 cut(s) 79, 739, 865, 979, 1409
ApeKI GCWGC 4 cut(s) 773, 992, 1297, 1358
ApoI RAATTY 3 cut(s) 424, 902, 1071
AseI ATTAAT 1 cut(s) 1236
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 197, 1150, 1176, 1215
AspS9I GGNCC 5 cut(s) 79, 137, 254, 979, 1187
AsuHPI GGTGA 5 cut(s) 395, 523, 704, 791, 1153
AvaII GGWCC 3 cut(s) 137, 254, 1187
BalI TGGCCA 1 cut(s) 867
BanI GGYRCC 1 cut(s) 955
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 4 cut(s) 760, 1004, 1309, 1345
BccI CCATC 3 cut(s) 79, 185, 857
BciT130I CCWGG 1 cut(s) 1178
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 344, 1423
BfaI CTAG 2 cut(s) 1362, 1435
BfmI CTRYAG 2 cut(s) 159, 942
BfoI RGCGCY 4 cut(s) 198, 1151, 1177, 1216
BglII AGATCT 1 cut(s) 920
BisI GCNGC 4 cut(s) 774, 993, 1298, 1359
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 4 cut(s) 775, 994, 1299, 1360
Bme1390I CCNGG 1 cut(s) 1178
Bme18I GGWCC 3 cut(s) 137, 254, 1187
BmgT120I GGNCC 5 cut(s) 79, 137, 254, 979, 1187
BmiI GGNNCC 3 cut(s) 372, 957, 1061
BmrFI CCNGG 1 cut(s) 1178
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 5 cut(s) 79, 847, 1020, 1243, 1314
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 1423
BsaJI CCNNGG 3 cut(s) 394, 736, 1177
Bsc4I CCNNNNNNNGG 5 cut(s) 380, 748, 988, 1055, 1391
Bse1I ACTGG 4 cut(s) 50, 61, 146, 1042
BseBI CCWGG 1 cut(s) 1178
BseDI CCNNGG 3 cut(s) 394, 736, 1177
BseGI GGATG 4 cut(s) 94, 631, 862, 1258
BseLI CCNNNNNNNGG 5 cut(s) 380, 748, 988, 1055, 1391
BseMII CTCAG 5 cut(s) 301, 380, 429, 594, 1404
BseNI ACTGG 4 cut(s) 50, 61, 146, 1042
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 4 cut(s) 760, 1004, 1309, 1345
BseYI CCCAGC 2 cut(s) 1292, 1354
Bsh1236I CGCG 1 cut(s) 1260
BshFI GGCC 5 cut(s) 81, 741, 867, 981, 1411
BshNI GGYRCC 1 cut(s) 955
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 5 cut(s) 380, 748, 988, 1055, 1391
BsmAI GTCTC 2 cut(s) 344, 1423
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 1375
BsnI GGCC 5 cut(s) 81, 741, 867, 981, 1411
Bso31I GGTCTC 1 cut(s) 1423
Bsp143I GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 736
Bsp68I TCGCGA 1 cut(s) 1260
BspACI CCGC 3 cut(s) 37, 776, 1415
BspANI GGCC 5 cut(s) 81, 741, 867, 981, 1411
BspCNI CTCAG 5 cut(s) 300, 379, 430, 595, 1403
BspFNI CGCG 1 cut(s) 1260
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 3 cut(s) 372, 957, 1061
BspPI GGATC 3 cut(s) 209, 333, 837
BspQI GCTCTTC 1 cut(s) 747
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 1423
BsrI ACTGG 4 cut(s) 50, 61, 146, 1042
BssECI CCNNGG 3 cut(s) 394, 736, 1177
BssMI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 2 cut(s) 394, 736
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 1178
Bst4CI ACNGT 3 cut(s) 355, 943, 1064
Bst6I CTCTTC 1 cut(s) 747
BstC8I GCNNGC 5 cut(s) 759, 894, 1172, 1258, 1413
BstDEI CTNAG 6 cut(s) 287, 366, 438, 603, 650, 1390
BstDSI CCRYGG 1 cut(s) 736
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 4 cut(s) 94, 631, 862, 1258
BstFNI CGCG 1 cut(s) 1260
BstH2I RGCGCY 4 cut(s) 198, 1151, 1177, 1216
BstHHI GCGC 4 cut(s) 197, 1150, 1176, 1215
BstKTI GATC 7 cut(s) 106, 217, 239, 328, 631, 832, 923
BstMAI GTCTC 2 cut(s) 344, 1423
BstMBI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 1178
BstNSI RCATGY 1 cut(s) 1339
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 1176
BstSFI CTRYAG 2 cut(s) 159, 942
BstUI CGCG 1 cut(s) 1260
BstV1I GCAGC 4 cut(s) 760, 1004, 1309, 1345
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 3 cut(s) 325, 829, 920
BstXI CCANNNNNNTGG 2 cut(s) 812, 1239
BstYI RGATCY 3 cut(s) 325, 829, 920
BsuRI GGCC 5 cut(s) 81, 741, 867, 981, 1411
BtgI CCRYGG 1 cut(s) 736
BtgZI GCGATG 1 cut(s) 1291
BtsCI GGATG 4 cut(s) 94, 631, 862, 1258
BtsI GCAGTG 1 cut(s) 1300
BtsIMutI CAGTG 2 cut(s) 327, 1300
BtuMI TCGCGA 1 cut(s) 1260
Cac8I GCNNGC 5 cut(s) 759, 894, 1172, 1258, 1413
CciI TCATGA 1 cut(s) 304
CfoI GCGC 4 cut(s) 197, 1150, 1176, 1215
Cfr13I GGNCC 5 cut(s) 79, 137, 254, 979, 1187
Csp6I GTAC 1 cut(s) 143
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 6 cut(s) 287, 366, 438, 603, 650, 1390
DpnI GATC 7 cut(s) 105, 216, 238, 327, 630, 831, 922
DpnII GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco130I CCWWGG 2 cut(s) 394, 736
Eco147I AGGCCT 1 cut(s) 1411
Eco31I GGTCTC 1 cut(s) 1423
Eco47I GGWCC 3 cut(s) 137, 254, 1187
Eco47III AGCGCT 1 cut(s) 1149
Eco57I CTGAAG 1 cut(s) 1412
Eco91I GGTNACC 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 1176
EcoT14I CCWWGG 2 cut(s) 394, 736
EcoT22I ATGCAT 1 cut(s) 825
ErhI CCWWGG 2 cut(s) 394, 736
FaqI GGGAC 1 cut(s) 538
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 774, 993, 1298, 1359
FokI GGATG 4 cut(s) 101, 618, 869, 1265
Fsp4HI GCNGC 4 cut(s) 774, 993, 1298, 1359
FspBI CTAG 2 cut(s) 1362, 1435
GlaI GCGC 4 cut(s) 196, 1149, 1175, 1214
GluI GCNGC 4 cut(s) 774, 993, 1298, 1359
GsaI CCCAGC 2 cut(s) 1296, 1358
HaeII RGCGCY 4 cut(s) 198, 1151, 1177, 1216
HaeIII GGCC 5 cut(s) 81, 741, 867, 981, 1411
HhaI GCGC 4 cut(s) 197, 1150, 1176, 1215
Hin6I GCGC 4 cut(s) 195, 1148, 1174, 1213
HinP1I GCGC 4 cut(s) 195, 1148, 1174, 1213
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 1273
HinfI GANTC 5 cut(s) 23, 164, 317, 362, 1349
HphI GGTGA 5 cut(s) 395, 523, 704, 791, 1153
Hpy166II GTNNAC 4 cut(s) 163, 879, 1187, 1348
Hpy188I TCNGA 8 cut(s) 57, 103, 127, 532, 1068, 1280, 1368, 1431
Hpy188III TCNNGA 4 cut(s) 305, 368, 1259, 1377
Hpy8I GTNNAC 4 cut(s) 163, 879, 1187, 1348
HpyAV CCTTC 5 cut(s) 267, 466, 514, 541, 1153
HpyCH4III ACNGT 3 cut(s) 355, 943, 1064
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 8 cut(s) 45, 491, 497, 809, 823, 860, 896, 1305
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 6 cut(s) 287, 366, 438, 603, 650, 1390
HpySE526I ACGT 1 cut(s) 108
HspAI GCGC 4 cut(s) 195, 1148, 1174, 1213
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
LguI GCTCTTC 1 cut(s) 747
Lsp1109I GCAGC 4 cut(s) 760, 1004, 1309, 1345
LweI GCATC 5 cut(s) 79, 847, 1020, 1243, 1314
MaeI CTAG 2 cut(s) 1362, 1435
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 710
MalI GATC 7 cut(s) 105, 216, 238, 327, 630, 831, 922
MboI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
MflI RGATCY 3 cut(s) 325, 829, 920
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 9 cut(s) 172, 424, 902, 925, 966, 1071, 1233, 1237, 1247
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 2 cut(s) 158, 1343
MmeI TCCRAC 2 cut(s) 1291, 1303
Mox20I TGGCCA 1 cut(s) 867
Mph1103I ATGCAT 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 966
MscI TGGCCA 1 cut(s) 867
MseI TTAA 5 cut(s) 617, 834, 1089, 1118, 1236
MslI CAYNNNNRTG 3 cut(s) 207, 804, 810
Msp20I TGGCCA 1 cut(s) 867
MspA1I CMGCKG 1 cut(s) 1358
MspR9I CCNGG 1 cut(s) 1178
Mva1269I GAATGC 1 cut(s) 1375
MvaI CCWGG 1 cut(s) 1178
MvnI CGCG 1 cut(s) 1260
MwoI GCNNNNNNNGC 1 cut(s) 176
NcoI CCATGG 1 cut(s) 736
NdeII GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
NlaIV GGNNCC 3 cut(s) 372, 957, 1061
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 710
NruI TCGCGA 1 cut(s) 1260
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 1 cut(s) 1339
PagI TCATGA 1 cut(s) 304
PceI AGGCCT 1 cut(s) 1411
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 1375
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 3 cut(s) 23, 317, 362
PflFI GACNNNGTC 1 cut(s) 1097
PkrI GCNGC 4 cut(s) 775, 994, 1299, 1360
PleI GAGTC 2 cut(s) 158, 1343
PpsI GAGTC 2 cut(s) 158, 1343
PshBI ATTAAT 1 cut(s) 1236
Psp6I CCWGG 1 cut(s) 1176
PspEI GGTNACC 1 cut(s) 710
PspFI CCCAGC 2 cut(s) 1292, 1354
PspGI CCWGG 1 cut(s) 1176
PspN4I GGNNCC 3 cut(s) 372, 957, 1061
PspPI GGNCC 5 cut(s) 79, 137, 254, 979, 1187
PsuI RGATCY 3 cut(s) 325, 829, 920
PsyI GACNNNGTC 1 cut(s) 1097
PvuII CAGCTG 1 cut(s) 1358
RruI TCGCGA 1 cut(s) 1260
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 3 cut(s) 207, 804, 810
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 5 cut(s) 617, 834, 1089, 1118, 1236
SatI GCNGC 4 cut(s) 774, 993, 1298, 1359
Sau3AI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
Sau96I GGNCC 5 cut(s) 79, 137, 254, 979, 1187
SchI GAGTC 2 cut(s) 158, 1343
ScrFI CCNGG 1 cut(s) 1178
SfaNI GCATC 5 cut(s) 79, 847, 1020, 1243, 1314
SfcI CTRYAG 2 cut(s) 159, 942
SinI GGWCC 3 cut(s) 137, 254, 1187
SmiMI CAYNNNNRTG 3 cut(s) 207, 804, 810
Sse9I AATT 9 cut(s) 172, 424, 902, 925, 966, 1071, 1233, 1237, 1247
SseBI AGGCCT 1 cut(s) 1411
SsiI CCGC 3 cut(s) 37, 776, 1415
SspMI CTAG 2 cut(s) 1362, 1435
StuI AGGCCT 1 cut(s) 1411
StyD4I CCNGG 1 cut(s) 1176
StyI CCWWGG 2 cut(s) 394, 736
TaaI ACNGT 3 cut(s) 355, 943, 1064
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 242
TasI AATT 9 cut(s) 172, 424, 902, 925, 966, 1071, 1233, 1237, 1247
TfiI GAWTC 3 cut(s) 23, 317, 362
Tru1I TTAA 5 cut(s) 617, 834, 1089, 1118, 1236
Tru9I TTAA 5 cut(s) 617, 834, 1089, 1118, 1236
TscAI CASTG 2 cut(s) 327, 1307
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 4 cut(s) 773, 992, 1297, 1358
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 9 cut(s) 249, 267, 293, 360, 446, 560, 611, 628, 1218
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 2 cut(s) 327, 1307
Tth111I GACNNNGTC 1 cut(s) 1097
VpaK11BI GGWCC 3 cut(s) 137, 254, 1187
VspI ATTAAT 1 cut(s) 1236
XapI RAATTY 3 cut(s) 424, 902, 1071
XceI RCATGY 1 cut(s) 1339
XcmI CCANNNNNNNNNTGG 1 cut(s) 1174
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 2 cut(s) 1362, 1435
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.