Rw3G008410

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
7818746 .. 7821005
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008410.1

Sequence Viewer

Length: 1401 bp
ATGGTTTTATCGAAGCTACCTGATTCGTCCAAGACCCGCAAGTGCAATCCAGTTCAGACCCAGTTGCTTTTTCCAACGGGCCAGATGGATGCTGTTGTGTCCGATCACGTTGAGCTTGACTTTTCAGATGTATTTGGTCCTGTACCAGTCCATGCCCCTGTAGACTCGGCTAATTCTGCCTCTGTTGAAGATGGCGCTGACCATATATATGATGATCCTGTCGTCATTCACAACCGATCACATTCTTTGGTCGGTCCTTCATCGTATGTAAGCCATTCATTGAAGCTCAGCAAACTCACTATTCATGACACAGAAGATTCAGTGGATCTGGTAGAGTGTCTCCATGAAGATACCGTGAAAGAATCTCAGGAACCTTTTATTGGTGATGTTGTCCTTGGAAAACCTCTAGAAGTTGTTGAGGAGAATTCCATGAAGACTGAGAGTGTAGGCATTGAAGATTTTGAGGTTTTGAAGGTTGTTGGGCAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAGAAGGGGACATCAGAAATATATGCTATGAAGGTCATGCGAAAGGATAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATATTAACAAAAGTTGATCATCCGTTCATTATCCAGCTGAGATACTCATTCCAAACCAAATACAGACTTTATCTCGTGCTGGATTTTGTCAATGGAGGTCACCTTTTCTTTCAGCTCTACCACCATGGCCTTTTCAGGGAAGAGCTGGCACGAATATATGCTGCTGAGATTGTTTCTGCCGTATCTCACCTCCATGCAAATGGCATAATGCATAGGGATCTTAAACCTGAAAATATCTTATTGGATGCAGATGGCCATGCCATGTTGACTGATTTTGGGCTTGCAAAGAAATTTGACGAAAATACAAGATCTAATTCTCTATGTGGAACTGGCCATGATAAGGCAGCAGATTGGTGGAGTGTGGGAGTTCTATTGTTTGAGATGCTTACTGGAAAGCCTCCTTTTACGGGGAACCGTCAGAAAATTCAACAGAAGATAGTTAAGGACAAAGTCAAGTTGCCAACCTTTTTAACAAGTGAAGCACATTCTCTGGTGAAAGCGCTATTAGAGAAGGACACCAGCAAGCGCCTGGGTTGTGGACCTCTGGGAAGTGATGAAATCAAGCGCCACAAATGGTTCAAGCCAATTAATTGGAAGAAATTGGATGGTCGCGAAATCCAACCAAGCTTCCGACCTGATGTTGCTGGGCAGCACTGCATCGCCAACTTTGAGAAATGCTGGACTGACATGCCACTTGTGGACTCCCCAGCTGCTAGTCCGAATGCTTCTGGAAACCCGTTCTCAGGCTTTAGTTATGTTAGGCCTGCAGTCTCTTTTCTTCAGAACTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

52.23

Weight (kDa)

6.32

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 154 - 397 6.7e-63 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 155 - 380 3.8e-26 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 228 - 309 1.4e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 1224
AciI CCGC 1 cut(s) 37
AclWI GGATC 3 cut(s) 209, 333, 837
AcoI YGGCCR 2 cut(s) 865, 943
AcsI RAATTY 3 cut(s) 424, 902, 1035
AcuI CTGAAG 1 cut(s) 1376
AfaI GTAC 1 cut(s) 144
AfeI AGCGCT 1 cut(s) 1113
AfiI CCNNNNNNNGG 5 cut(s) 380, 748, 952, 1019, 1355
AgsI TTSAA 6 cut(s) 188, 283, 455, 472, 1040, 1192
AjnI CCWGG 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 9 cut(s) 16, 115, 286, 602, 649, 727, 757, 1239, 1322
AluI AGCT 9 cut(s) 16, 115, 286, 602, 649, 727, 757, 1239, 1322
Alw26I GTCTC 2 cut(s) 344, 1387
AlwI GGATC 3 cut(s) 209, 333, 837
Aor51HI AGCGCT 1 cut(s) 1113
AoxI GGCC 5 cut(s) 79, 739, 865, 943, 1373
ApeKI GCWGC 4 cut(s) 773, 956, 1261, 1322
ApoI RAATTY 3 cut(s) 424, 902, 1035
AseI ATTAAT 1 cut(s) 1200
AspLEI GCGC 4 cut(s) 197, 1114, 1140, 1179
AspS9I GGNCC 4 cut(s) 79, 137, 254, 1151
AsuHPI GGTGA 5 cut(s) 395, 523, 704, 791, 1117
AvaII GGWCC 3 cut(s) 137, 254, 1151
BalI TGGCCA 2 cut(s) 867, 945
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 4 cut(s) 760, 968, 1273, 1309
BccI CCATC 4 cut(s) 79, 185, 857, 1211
BceAI ACGGC 1 cut(s) 776
BciT130I CCWGG 1 cut(s) 1142
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 344, 1387
BfaI CTAG 3 cut(s) 407, 1326, 1399
BfmI CTRYAG 2 cut(s) 159, 1377
BfoI RGCGCY 4 cut(s) 198, 1115, 1141, 1180
BglII AGATCT 1 cut(s) 920
BisI GCNGC 4 cut(s) 774, 957, 1262, 1323
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 4 cut(s) 775, 958, 1263, 1324
Bme1390I CCNGG 1 cut(s) 1142
Bme18I GGWCC 3 cut(s) 137, 254, 1151
BmgT120I GGNCC 4 cut(s) 79, 137, 254, 1151
BmiI GGNNCC 2 cut(s) 372, 1025
BmrFI CCNGG 1 cut(s) 1142
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 4 cut(s) 79, 847, 984, 1278
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 287
BsaJI CCNNGG 3 cut(s) 394, 736, 1141
Bsc4I CCNNNNNNNGG 5 cut(s) 380, 748, 952, 1019, 1355
Bse1I ACTGG 5 cut(s) 50, 61, 146, 946, 1006
BseBI CCWGG 1 cut(s) 1142
BseDI CCNNGG 3 cut(s) 394, 736, 1141
BseGI GGATG 4 cut(s) 94, 631, 862, 1222
BseLI CCNNNNNNNGG 5 cut(s) 380, 748, 952, 1019, 1355
BseMII CTCAG 7 cut(s) 301, 380, 429, 594, 641, 768, 1368
BseNI ACTGG 5 cut(s) 50, 61, 146, 946, 1006
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 4 cut(s) 760, 968, 1273, 1309
BseYI CCCAGC 2 cut(s) 1256, 1318
Bsh1236I CGCG 1 cut(s) 1224
BshFI GGCC 5 cut(s) 81, 741, 867, 945, 1375
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 5 cut(s) 380, 748, 952, 1019, 1355
BsmAI GTCTC 2 cut(s) 344, 1387
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 5 cut(s) 81, 741, 867, 945, 1375
Bsp143I GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
Bsp1720I GCTNAGC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 736
Bsp68I TCGCGA 1 cut(s) 1224
BspACI CCGC 1 cut(s) 37
BspANI GGCC 5 cut(s) 81, 741, 867, 945, 1375
BspCNI CTCAG 7 cut(s) 300, 379, 430, 595, 642, 769, 1367
BspFNI CGCG 1 cut(s) 1224
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 372, 1025
BspMAI CTGCAG 1 cut(s) 1381
BspPI GGATC 3 cut(s) 209, 333, 837
BspQI GCTCTTC 1 cut(s) 747
BsrI ACTGG 5 cut(s) 50, 61, 146, 946, 1006
BssECI CCNNGG 3 cut(s) 394, 736, 1141
BssMI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 2 cut(s) 394, 736
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 1142
Bst4CI ACNGT 2 cut(s) 355, 1028
Bst6I CTCTTC 1 cut(s) 747
BstC8I GCNNGC 4 cut(s) 759, 894, 1136, 1377
BstDEI CTNAG 7 cut(s) 287, 366, 438, 603, 650, 777, 1354
BstDSI CCRYGG 1 cut(s) 736
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 4 cut(s) 94, 631, 862, 1222
BstFNI CGCG 1 cut(s) 1224
BstH2I RGCGCY 4 cut(s) 198, 1115, 1141, 1180
BstHHI GCGC 4 cut(s) 197, 1114, 1140, 1179
BstKTI GATC 7 cut(s) 106, 217, 239, 328, 631, 832, 923
BstMAI GTCTC 2 cut(s) 344, 1387
BstMBI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 1142
BstNSI RCATGY 1 cut(s) 1303
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 1140
BstSFI CTRYAG 2 cut(s) 159, 1377
BstUI CGCG 1 cut(s) 1224
BstV1I GCAGC 4 cut(s) 760, 968, 1273, 1309
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 3 cut(s) 325, 829, 920
BstXI CCANNNNNNTGG 2 cut(s) 812, 1203
BstYI RGATCY 3 cut(s) 325, 829, 920
BsuRI GGCC 5 cut(s) 81, 741, 867, 945, 1375
BtgI CCRYGG 1 cut(s) 736
BtgZI GCGATG 1 cut(s) 1255
BtsCI GGATG 4 cut(s) 94, 631, 862, 1222
BtsI GCAGTG 1 cut(s) 1264
BtsIMutI CAGTG 2 cut(s) 327, 1264
BtuMI TCGCGA 1 cut(s) 1224
Cac8I GCNNGC 4 cut(s) 759, 894, 1136, 1377
CciI TCATGA 1 cut(s) 304
CfoI GCGC 4 cut(s) 197, 1114, 1140, 1179
Cfr13I GGNCC 4 cut(s) 79, 137, 254, 1151
Csp6I GTAC 1 cut(s) 143
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 7 cut(s) 287, 366, 438, 603, 650, 777, 1354
DpnI GATC 7 cut(s) 105, 216, 238, 327, 630, 831, 922
DpnII GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
EaeI YGGCCR 2 cut(s) 865, 943
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco130I CCWWGG 2 cut(s) 394, 736
Eco147I AGGCCT 1 cut(s) 1375
Eco47I GGWCC 3 cut(s) 137, 254, 1151
Eco47III AGCGCT 1 cut(s) 1113
Eco57I CTGAAG 1 cut(s) 1376
Eco91I GGTNACC 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 1140
EcoT14I CCWWGG 2 cut(s) 394, 736
EcoT22I ATGCAT 1 cut(s) 825
ErhI CCWWGG 2 cut(s) 394, 736
FaqI GGGAC 1 cut(s) 538
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 774, 957, 1262, 1323
FokI GGATG 4 cut(s) 101, 618, 869, 1229
Fsp4HI GCNGC 4 cut(s) 774, 957, 1262, 1323
FspBI CTAG 3 cut(s) 407, 1326, 1399
GlaI GCGC 4 cut(s) 196, 1113, 1139, 1178
GluI GCNGC 4 cut(s) 774, 957, 1262, 1323
GsaI CCCAGC 2 cut(s) 1260, 1322
HaeII RGCGCY 4 cut(s) 198, 1115, 1141, 1180
HaeIII GGCC 5 cut(s) 81, 741, 867, 945, 1375
HhaI GCGC 4 cut(s) 197, 1114, 1140, 1179
Hin6I GCGC 4 cut(s) 195, 1112, 1138, 1177
HinP1I GCGC 4 cut(s) 195, 1112, 1138, 1177
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 1237
HinfI GANTC 5 cut(s) 23, 164, 317, 362, 1313
HphI GGTGA 5 cut(s) 395, 523, 704, 791, 1117
Hpy166II GTNNAC 4 cut(s) 163, 879, 1151, 1312
Hpy188I TCNGA 8 cut(s) 57, 103, 127, 532, 1032, 1244, 1332, 1395
Hpy188III TCNNGA 5 cut(s) 305, 368, 407, 1223, 1341
Hpy8I GTNNAC 4 cut(s) 163, 879, 1151, 1312
HpyAV CCTTC 5 cut(s) 267, 466, 514, 541, 1117
HpyCH4III ACNGT 2 cut(s) 355, 1028
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 9 cut(s) 45, 491, 497, 809, 823, 860, 896, 1269, 1379
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 7 cut(s) 287, 366, 438, 603, 650, 777, 1354
HpySE526I ACGT 1 cut(s) 108
HspAI GCGC 4 cut(s) 195, 1112, 1138, 1177
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
LguI GCTCTTC 1 cut(s) 747
Lsp1109I GCAGC 4 cut(s) 760, 968, 1273, 1309
LweI GCATC 4 cut(s) 79, 847, 984, 1278
MaeI CTAG 3 cut(s) 407, 1326, 1399
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 710
MalI GATC 7 cut(s) 105, 216, 238, 327, 630, 831, 922
MboI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
MflI RGATCY 3 cut(s) 325, 829, 920
MlsI TGGCCA 2 cut(s) 867, 945
MluCI AATT 8 cut(s) 172, 424, 902, 925, 1035, 1197, 1201, 1211
MluNI TGGCCA 2 cut(s) 867, 945
MlyI GAGTC 2 cut(s) 158, 1307
MmeI TCCRAC 3 cut(s) 98, 1255, 1267
Mox20I TGGCCA 2 cut(s) 867, 945
Mph1103I ATGCAT 1 cut(s) 825
MscI TGGCCA 2 cut(s) 867, 945
MseI TTAA 5 cut(s) 617, 834, 1053, 1082, 1200
MslI CAYNNNNRTG 3 cut(s) 207, 804, 810
Msp20I TGGCCA 2 cut(s) 867, 945
MspA1I CMGCKG 2 cut(s) 649, 1322
MspR9I CCNGG 1 cut(s) 1142
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 1 cut(s) 1142
MvnI CGCG 1 cut(s) 1224
MwoI GCNNNNNNNGC 1 cut(s) 176
NcoI CCATGG 1 cut(s) 736
NdeII GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
NlaIV GGNNCC 2 cut(s) 372, 1025
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 710
NruI TCGCGA 1 cut(s) 1224
NsiI ATGCAT 1 cut(s) 825
NspI RCATGY 1 cut(s) 1303
PagI TCATGA 1 cut(s) 304
PceI AGGCCT 1 cut(s) 1375
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 1339
PfeI GAWTC 3 cut(s) 23, 317, 362
PflFI GACNNNGTC 1 cut(s) 1061
PkrI GCNGC 4 cut(s) 775, 958, 1263, 1324
PleI GAGTC 2 cut(s) 158, 1307
PpsI GAGTC 2 cut(s) 158, 1307
PshBI ATTAAT 1 cut(s) 1200
Psp6I CCWGG 1 cut(s) 1140
PspEI GGTNACC 1 cut(s) 710
PspFI CCCAGC 2 cut(s) 1256, 1318
PspGI CCWGG 1 cut(s) 1140
PspN4I GGNNCC 2 cut(s) 372, 1025
PspPI GGNCC 4 cut(s) 79, 137, 254, 1151
PstI CTGCAG 1 cut(s) 1381
PsuI RGATCY 3 cut(s) 325, 829, 920
PsyI GACNNNGTC 1 cut(s) 1061
PvuII CAGCTG 2 cut(s) 649, 1322
RruI TCGCGA 1 cut(s) 1224
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 3 cut(s) 207, 804, 810
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 5 cut(s) 617, 834, 1053, 1082, 1200
SatI GCNGC 4 cut(s) 774, 957, 1262, 1323
Sau3AI GATC 7 cut(s) 103, 214, 236, 325, 628, 829, 920
Sau96I GGNCC 4 cut(s) 79, 137, 254, 1151
SchI GAGTC 2 cut(s) 158, 1307
ScrFI CCNGG 1 cut(s) 1142
SfaNI GCATC 4 cut(s) 79, 847, 984, 1278
SfcI CTRYAG 2 cut(s) 159, 1377
SinI GGWCC 3 cut(s) 137, 254, 1151
SmiMI CAYNNNNRTG 3 cut(s) 207, 804, 810
Sse9I AATT 8 cut(s) 172, 424, 902, 925, 1035, 1197, 1201, 1211
SseBI AGGCCT 1 cut(s) 1375
SsiI CCGC 1 cut(s) 37
SspMI CTAG 3 cut(s) 407, 1326, 1399
StuI AGGCCT 1 cut(s) 1375
StyD4I CCNGG 1 cut(s) 1140
StyI CCWWGG 2 cut(s) 394, 736
TaaI ACNGT 2 cut(s) 355, 1028
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 242
TasI AATT 8 cut(s) 172, 424, 902, 925, 1035, 1197, 1201, 1211
TfiI GAWTC 3 cut(s) 23, 317, 362
Tru1I TTAA 5 cut(s) 617, 834, 1053, 1082, 1200
Tru9I TTAA 5 cut(s) 617, 834, 1053, 1082, 1200
TscAI CASTG 2 cut(s) 327, 1271
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 4 cut(s) 773, 956, 1261, 1322
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 9 cut(s) 249, 267, 293, 360, 446, 560, 611, 628, 1182
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 2 cut(s) 327, 1271
Tth111I GACNNNGTC 1 cut(s) 1061
VpaK11BI GGWCC 3 cut(s) 137, 254, 1151
VspI ATTAAT 1 cut(s) 1200
XapI RAATTY 3 cut(s) 424, 902, 1035
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 1 cut(s) 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 1138
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 3 cut(s) 407, 1326, 1399
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.